Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi648g00004 ATGATTCCTTGGGGTGGCCTCAGTTGTTGTTTGAGTGCTGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAGGGATGCAGAAATTCTTAAATCCGTAACCCGTGTCAATCAGTTGAAGGAACTAGCTCAACTGTTAGATGCGGAAATATTACCGTTGCTTGTTACAATTTCTGGAAGAGTGGGCTCTGAAACCCCAGTTAACTGTGAGTTCAGTGGTTTAAGAGGTGTAATAGTTGAAGAAACGGCAGAGCAGCATTTTCTTAAACACAACGATGCTGGTTCCTGGATACAAGATTCTGCTTTAGTGCTATCCATGAGTAAAGAGGTTCCTTGGTATCTGGATGATGGGACTGATCATGTGCATGTAGTTGGAGCTCGGGGTGCCACTGGTTTTGTATTACCTGTTGGAAGTGAGGCATTTGAAGAATCAGGTCGGTCACTTGTACGTGGAACATTGGATTATCTCCAGGGTCTCAAGATGCTTGGAGTTAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTCGTTGGTGAGGCTGCTAAAGATGATGTTGGGACCGTTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCCAAAACGATTGATCAACTCATTGCAAATCTCGGGAAATGGGCAAGGTGGTATAAGTATGCTTCTGCGGGTTTGACAGTGTTTGGCGCTTATCTAATAGCCAAGCATGCTATTCGATACATCTTGGAAAGACGGCGCCGCATCGAAATGCAAAAAAGGGTTCTTGCTGCAGCTGCTAAGAGGTCAGGACAAGATAATGAAGGTGAAAAGACTGACAGCTTATCAGATGGTGCTAGAAGGGATCGCTTCATGCCAGAGTTGTGTGTAATATGCCTCGTGCAAGAATATAATACTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGAATGCTCTTCGCACGTAACCAGTTGTCCTCTATGCCGGCGGCAGATAGAGAAGGTAGTGAAGACTTTCCGTCATTGA 1020 0.4569 MIPWGGLSCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELAQLLDAEILPLLVTISGRVGSETPVNCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALVLSMSKEVPWYLDDGTDHVHVVGARGATGFVLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGTVRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASAGLTVFGAYLIAKHAIRYILERRRRIEMQKRVLAAAAKRSGQDNEGEKTDSLSDGARRDRFMPELCVICLVQEYNTVFVPCGHMCCCTECSSHVTSCPLCRRQIEKVVKTFRH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi648g00004 339 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
Gabi648g00004 339 PANTHER - 1 306 IPR044231 GO:0004842|GO:0016567
Gabi648g00004 339 CDD RING-HC_LRSAM1 292 335 - -
Gabi648g00004 339 Pfam E3 Ubiquitin ligase 85 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
Gabi648g00004 339 SUPERFAMILY RING/U-box 291 333 - -
Gabi648g00004 339 Pfam Zinc finger, C3HC4 type (RING finger) 290 333 - -
Gabi648g00004 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 338 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi648g00004 Gabi-Chr648 19310 23860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi648g00004 1 272 C3H Transcription Factor Family AT1G63900 76.642 3.81e-154 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi648g00004 K15688 - gmx:100803252 617.076