Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi648g00003 ATGATTCCTTGGGGTGGCCTCAGTTGTTGTTTGAGTGCTGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAGGGATGCAGAAATTCTTAAATCCGTAACCCGTGTCAATCAGTTGAAGGAACTAGCTCAACTGTTAGATGCGGAAATATTACCGTTGCTTGTTACAATTTCTGGAAGAGTGGGCTCTGAAACCCCAGTTAACTGTGAGTTCAGTGGTTTAAGAGGTGTAATAGTTGAAGAAACGGCAGAGCAGCATTTTCTTAAACACAACGATGCTGGTTCCTGGATACAAGATTCTGCTTTAGTGCTATCCATGAGTAAAGAGGTTCCTTGGTATCTGGATGATGGGACTGATCATGTGCATGTAGTTGGAGCTCGGGGTGCCACTGGTTTTGTATTACCTGTTGGAAGTGAGGCATTTGAAGAATCAGGTCGGTCACTTGTACGTGGAACATTGGATTATCTCCAGGGTCTCAAGATGCTTGGAGTTAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTCGTTGGTGAGGCTGCTAAAGATGATGTTGGGACCGTTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCCAAAACGATTGATCAACTCATTGCAAATCTCGGGAAATGGGCAAGGTGGTATAAGTATGCTTCTGCGGGTTTGACAGTGTTTGGCGCTTATCTAATAGCCAAGCATGCTATTCGATACATCTTGGAAAGACGGCGCCGCATCGAAATGCAAAAAAGGGTTCTTGCTGCAGCTGCTAAGAGGTCAGGACAAGATAATGAAGAAATTTATGATTCTTTCTCAGGTGAAAAGACTGACAGCTTATCAGATGGTGCTAGAAGGGATCGCTTCATGCCAGAGTTGTGTGTAATATGCCTCGTGCAAGAATATAATACTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGAATGCTCTTCGCACGTAACCAGTTGTCCTCTATGCCGGCGGCAGATAGAGAAGGTAGTGAAGACTTTCCGTCATTGA 1041 0.4524 MIPWGGLSCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELAQLLDAEILPLLVTISGRVGSETPVNCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALVLSMSKEVPWYLDDGTDHVHVVGARGATGFVLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGTVRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASAGLTVFGAYLIAKHAIRYILERRRRIEMQKRVLAAAAKRSGQDNEEIYDSFSGEKTDSLSDGARRDRFMPELCVICLVQEYNTVFVPCGHMCCCTECSSHVTSCPLCRRQIEKVVKTFRH 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi648g00003 346 CDD RING-HC_LRSAM1 299 342 - -
Gabi648g00003 346 Pfam E3 Ubiquitin ligase 85 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
Gabi648g00003 346 PANTHER - 1 313 IPR044231 GO:0004842|GO:0016567
Gabi648g00003 346 SUPERFAMILY RING/U-box 298 340 - -
Gabi648g00003 346 Pfam Zinc finger, C3HC4 type (RING finger) 297 340 - -
Gabi648g00003 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 345 IPR013083 -
Gabi648g00003 346 ProSiteProfiles Zinc finger RING-type profile. 299 334 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi648g00003 Gabi-Chr648 19310 23862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi648g00003 1 274 C3H Transcription Factor Family AT1G63900 76.087 8.41e-154 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi648g00003 K15688 - gmx:100803252 610.527