Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi648g00002 ATGATTCCTTGGGGTGGCCTCAGTTGTTGTTTGAGTGCTGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAGGGATGCAGAAATTCTTAAATCCGTAACCCGTGTCAATCAGTTGAAGGAACTAGCTCAACTGTTAGATGCGGAAATATTACCGTTGCTTGTTACAATTTCTGGAAGAGTGGGCTCTGAAACCCCAGTTAACTGTGAGTTCAGTGGTTTAAGAGGTGTAATAGTTGAAGAAACGGCAGAGCAGCATTTTCTTAAACACAACGATGCTGGTTCCTGGATACAAGATTCTGCTTTAGTGCTATCCATGAGTAAAGAGGTTCCTTGGTATCTGGATGATGGGACTGATCATGTGCATGTAGTTGGAGCTCGGGGTGCCACTGGTTTTGTATTACCTGTTGGAAGTGAGGCATTTGAAGAATCAGGTCGGTCACTTGTACGTGGAACATTGGATTATCTCCAGGGTCTCAAGATGCTTGGAGTTAAGAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTCGTTGGTGAGGCTGCTAAAGATGATGTTGGGACCGTTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCCAAAACGATTGATCAACTCATTGCAAATCTCGGGAAATGGGCAAGGTGGTATAAGTATGCTTCTGCGGGTTTGACAGTGTTTGGCGCTTATCTAATAGCCAAGCATGCTATTCGATACATCTTGGAAAGACGGCGCCGCATCGAAATGCAAAAAAGGGTTCTTGCTGCAGCTGCTAAGAGGTCAGGACAAGATAATGAAGGTATATTGCTAAGGGATCGCTTCATGCCAGAGTTGTGTGTAATATGCCTCGTGCAAGAATATAATACTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGAATGCTCTTCGCACGTAACCAGTTGTCCTCTATGCCGGCGGCAGATAGAGAAGGTAGTGAAGACTTTCCGTCATTGA 996 0.4558 MIPWGGLSCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELAQLLDAEILPLLVTISGRVGSETPVNCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALVLSMSKEVPWYLDDGTDHVHVVGARGATGFVLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGTVRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASAGLTVFGAYLIAKHAIRYILERRRRIEMQKRVLAAAAKRSGQDNEGILLRDRFMPELCVICLVQEYNTVFVPCGHMCCCTECSSHVTSCPLCRRQIEKVVKTFRH 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi648g00002 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 330 IPR013083 -
Gabi648g00002 331 SUPERFAMILY RING/U-box 283 325 - -
Gabi648g00002 331 PANTHER - 1 298 IPR044231 GO:0004842|GO:0016567
Gabi648g00002 331 Pfam E3 Ubiquitin ligase 85 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
Gabi648g00002 331 ProSiteProfiles Zinc finger RING-type profile. 284 319 IPR001841 -
Gabi648g00002 331 Pfam Zinc finger, C3HC4 type (RING finger) 282 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi648g00002 Gabi-Chr648 19310 23864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi648g00002 1 273 C3H Transcription Factor Family AT1G63900 76.727 5.31e-155 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi648g00002 K15688 - gmx:100800734 591.652