Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi643g00005 ATGGATTTCTTCACCGAACTTGATTTCCCAAAACTTGAGATTCCTCATGACCTCAACTGGTTTTCCTCTCCTCAACAAAACGAGACAGACAAAATCATGGAAATTTCGCCATTAGAGGGTTTCTTCGAGTTTGATTGGCAAACCCAGTTGCCATACCAAAACAAGAGACTTTGCTTCAATGAGTTCCCAGATCTTGAAAATTTCAACTTCGACTTCAACCTTCCATCGCTTGATGAATATTTTGCGGTGCACGAACCGAAGCCCCTGAATATTGTTGTTCCCCCTTGGGGGCATTGCAATCGTGAGTGTGGTATTGGCGAAACTTCGGGGAAGATTGGAGGTGGGTTTGGGACTTCTGTGAAGAAAGAGGTGGAGAATGAAGAGTTGTCAACTCCAGTTGCTAGTGGAAGCAAAAAGAAGAGGTCAATTGCTTTGGAATTTGATGAGATAAAGAAGCATTTTGGGCTTCCCATAACAGAAGCGGCAAAGGAAATGAATGTTGGGTTGACCCTGTTGAAGAGAAGGTGCAGGGAGCTCAACATCACGAGGTGGCCTCACAGGAAACTAAAGAGCTTGAAGTTACTCATCGACAACGTCAAGGAAATGGGTTTGGCAAACGAGGTTGTCATGTTGGAGAAACACAAAATGATGTTGGAGAGACTACCGGGAATGGAACTGAATGAAGAAACCAAGAAGCTGAGGCAGGCTTGTTTTAAAGCTAATTACAAGAGGAGAAGATGTTTGGCCTCCCAATCTTGA 759 0.4401 MDFFTELDFPKLEIPHDLNWFSSPQQNETDKIMEISPLEGFFEFDWQTQLPYQNKRLCFNEFPDLENFNFDFNLPSLDEYFAVHEPKPLNIVVPPWGHCNRECGIGETSGKIGGGFGTSVKKEVENEELSTPVASGSKKKRSIALEFDEIKKHFGLPITEAAKEMNVGLTLLKRRCRELNITRWPHRKLKSLKLLIDNVKEMGLANEVVMLEKHKMMLERLPGMELNEETKKLRQACFKANYKRRRCLASQS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi643g00005 252 ProSiteProfiles RWP-RK domain profile. 129 213 IPR003035 -
Gabi643g00005 252 Pfam RWP-RK domain 145 192 IPR003035 -
Gabi643g00005 252 PANTHER PROTEIN RKD4 136 251 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi643g00005 Gabi-Chr643 68199 70008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi643g00005 145 249 AtRKD Transcription Factor Family AT5G53040 62.857 9.08e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi643g00005 RWP-RK 8.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi643g00005 - - aprc:113850801 342.043