Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi636g00019 ATGAAGATTAACGTCAAGACTCTCAAGGGGACTCACTTTGAGATCGAAGTGAAACCACAAGACACGGTTGCTGATGTGAAGAAAAACATAGAGGTAGTTCAAGGTGTGGATGTTTACCCTGCTGCACAGCAAATGCTTATTCATAAGGGAAAAGTGCTTAAAGATGCCACAACCCTGGAAGAAAATGAAGTTGCTGAGAATAGTTTGATGGTGATCATGTTATCCAAGAATAAGGTATCATCAAGTGGAGCCTCAACTGCTTCACCTGCACCCTCAAACCTGGCAGCCCAACCTGCAAGTTCTTTGCCTCCAACTTCATCAACATCTTCAGCATCTCAACCTCCTGCTTCGACTGTAGGACAGGGAGAATCCAATTCTGAGCAAAGTCCTGTTATTACTCCTCCCACTACTGCAGTGCCCAGCATCTATGGCCAAGCAGGGTCAGATGTCATTGCTGGAAATAATTTAGAATCAACTATTCAACAGATTCTAGAAATGGGAGGAGGAAGTTGGGATCGGGATACTGTTATCCGTGCTCTTCGTGCTGCATTTAACAATCCTGAAAGAGCTGTTGAATATCTCTATTCTGGCATTCCTGAACAAGCTGATGTCCCGGCAGTTGCTAGATCCCCCACCATTGGGCAGGAAGCAAACCCTTTAGTCCAGGCTCTGCAACCAGCTCTACCTACTAGTGGGCCTAACACCAACCCGCTCAACCTGTTCCCCGAGGGCATTCCCGATGGTGCAAATGATGCGGGGGACTTGGATTTCTTGCGGAACAGTCAGCAGTTCCAAGCCTTGAGAGCGATGGTGCAAGCAAACCCCCAAATTTTACAGCCCATGCTTCAGGAACTGGGAAAACAAAATCCCCACCTAATGCAGCTCATCCAAGAGCATCAAGCTGACTTCTTACGCCTTATAAATGAACCTGAAGGAGAAGAGAACCTACAGAGTCAGTTGGCTTCTGAGATGCCTCAAGCCATCACCATCACCCCTGAGGAGCATGATGCCATTCAACGGCTTGAAGACATGGGATTTGATCGAGATCTTGTGTTGGAGGTGTTCTTTGCATGCAATAAAAACGAGGATTTGGCAGCCAACTATCTATTGGATCACCAGAATGAATTTGAGGACTAG 1137 0.467 MKINVKTLKGTHFEIEVKPQDTVADVKKNIEVVQGVDVYPAAQQMLIHKGKVLKDATTLEENEVAENSLMVIMLSKNKVSSSGASTASPAPSNLAAQPASSLPPTSSTSSASQPPASTVGQGESNSEQSPVITPPTTAVPSIYGQAGSDVIAGNNLESTIQQILEMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQADVPAVARSPTIGQEANPLVQALQPALPTSGPNTNPLNLFPEGIPDGANDAGDLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEHQADFLRLINEPEGEENLQSQLASEMPQAITITPEEHDAIQRLEDMGFDRDLVLEVFFACNKNEDLAANYLLDHQNEFED 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi636g00019 378 MobiDBLite consensus disorder prediction 81 139 - -
Gabi636g00019 378 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Gabi636g00019 378 Pfam XPC-binding domain 255 310 IPR015360 GO:0003684|GO:0006289|GO:0043161
Gabi636g00019 378 NCBIfam UV excision repair protein Rad23 1 377 IPR004806 GO:0006289
Gabi636g00019 378 FunFam UV excision repair protein RAD23 1 80 - -
Gabi636g00019 378 CDD UBA1_Rad23_plant 150 199 - -
Gabi636g00019 378 Pfam UBA/TS-N domain 156 194 IPR015940 -
Gabi636g00019 378 Pfam UBA/TS-N domain 336 369 IPR015940 -
Gabi636g00019 378 SMART uba_6 334 371 IPR015940 -
Gabi636g00019 378 SMART uba_6 156 196 IPR015940 -
Gabi636g00019 378 CDD Ubl_Rad23 1 74 - -
Gabi636g00019 378 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 367 - -
Gabi636g00019 378 SMART CBM 253 296 IPR006636 -
Gabi636g00019 378 Gene3D - 1 80 - -
Gabi636g00019 378 Gene3D - 150 199 - -
Gabi636g00019 378 Gene3D - 326 374 - -
Gabi636g00019 378 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 331 372 IPR015940 -
Gabi636g00019 378 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 154 197 IPR015940 -
Gabi636g00019 378 SUPERFAMILY UBA-like 316 375 IPR009060 GO:0005515
Gabi636g00019 378 Gene3D - 246 311 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gabi636g00019 378 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Gabi636g00019 378 SUPERFAMILY UBA-like 153 205 IPR009060 GO:0005515
Gabi636g00019 378 FunFam UV excision repair protein RAD23 homolog 325 373 - -
Gabi636g00019 378 SUPERFAMILY Ubiquitin-like 1 91 IPR029071 -
Gabi636g00019 378 SUPERFAMILY XPC-binding domain 251 314 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gabi636g00019 378 FunFam UV excision repair protein RAD23 B 247 311 - -
Gabi636g00019 378 PRINTS DNA repair protein Rad23 signature 360 375 IPR004806 GO:0006289
Gabi636g00019 378 PRINTS DNA repair protein Rad23 signature 328 344 IPR004806 GO:0006289
Gabi636g00019 378 PRINTS DNA repair protein Rad23 signature 345 359 IPR004806 GO:0006289
Gabi636g00019 378 PRINTS DNA repair protein Rad23 signature 281 303 IPR004806 GO:0006289
Gabi636g00019 378 FunFam UV excision repair protein RAD23 homolog 149 199 - -
Gabi636g00019 378 SMART ubq_7 1 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi636g00019 Gabi-Chr636 98035 104618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi636g00019 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.838 1.37e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi636g00019 K10839 - jre:108987071 520.776