Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi636g00018 ATGAAGATTAACGTCAAGACTCTCAAGGGGACTCACTTTGAGATCGAAGTGAAACCACAAGACACGGTTGCTGATGTGAAGAAAAACATAGAGGTAGTTCAAGGTGTGGATGTTTACCCTGCTGCACAGCAAATGCTTATTCATAAGGGAAAAGTGCTTAAAGATGCCACAACCCTGGAAGAAAATGAAGTTGCTGAGAATAGTTTGATGGTGATCATGTTATCCAAGAATAAGGTATCATCAAGTGGAGCCTCAACTGCTTCACCTGCACCCTCAAACCTGGTAAGTACAACCCAACCTGCAAGTTCTTTGCCTCCAACTTCATCAACATCTTCAGCATCTCAACCTCCTGCTTCGACTAATGTTCTTTTTGACATCTATGGCCAAGCAGGGTCAGATGTCATTGCTGGAAATAATTTAGAATCAACTATTCAACAGATTCTAGAAATGGGAGGAGGAAGTTGGGATCGGGATACTGTTATCCGTGCTCTTCGTGCTGCATTTAACAATCCTGAAAGAGCTGTTGAATATCTCTATTCTGGCATTCCTGAACAAGCTGATGTCCCGGCAGTTGCTAGATCCCCCACCATTGGGCAGGAAGCAAACCCTTTAGTCCAGGCTCTGCAACCAGCTCTACCTACTAGTGGGCCTAACACCAACCCGCTCAACCTGTTCCCCGAGGGCATTCCCGATGGTGCAAATGATGCGGGGGACTTGGATTTCTTGCGGAACAGTCAGCAGTTCCAAGCCTTGAGAGCGATGGTGCAAGCAAACCCCCAAATTTTACAGCCCATGCTTCAGGAACTGGGAAAACAAAATCCCCACCTAATGCAGCTCATCCAAGAGCATCAAGCTGACTTCTTACGCCTTATAAATGAACCTGAAGGAGAAGAGAACCTACAGAGTCAGTTGGCTTCTGAGATGCCTCAAGCCATCACCATCACCCCTGAGGAGCATGATGCCATTCAACGGCTTGAAGACATGGGATTTGATCGAGATCTTGTGTTGGAGGTGTTCTTTGCATGCAATAAAAACGAGGATTTGGCAGCCAACTATCTATTGGATCACCAGAATGAATTTGAGGACTAG 1089 0.4591 MKINVKTLKGTHFEIEVKPQDTVADVKKNIEVVQGVDVYPAAQQMLIHKGKVLKDATTLEENEVAENSLMVIMLSKNKVSSSGASTASPAPSNLVSTTQPASSLPPTSSTSSASQPPASTNVLFDIYGQAGSDVIAGNNLESTIQQILEMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQADVPAVARSPTIGQEANPLVQALQPALPTSGPNTNPLNLFPEGIPDGANDAGDLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEHQADFLRLINEPEGEENLQSQLASEMPQAITITPEEHDAIQRLEDMGFDRDLVLEVFFACNKNEDLAANYLLDHQNEFED 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi636g00018 362 Gene3D - 1 80 - -
Gabi636g00018 362 FunFam UV excision repair protein RAD23 homolog 133 183 - -
Gabi636g00018 362 SUPERFAMILY UBA-like 300 359 IPR009060 GO:0005515
Gabi636g00018 362 CDD UBA1_Rad23_plant 134 183 - -
Gabi636g00018 362 FunFam UV excision repair protein RAD23 homolog 309 357 - -
Gabi636g00018 362 NCBIfam UV excision repair protein Rad23 1 361 IPR004806 GO:0006289
Gabi636g00018 362 Gene3D - 230 295 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gabi636g00018 362 CDD Ubl_Rad23 1 74 - -
Gabi636g00018 362 FunFam UV excision repair protein RAD23 B 231 295 - -
Gabi636g00018 362 MobiDBLite consensus disorder prediction 82 117 - -
Gabi636g00018 362 SUPERFAMILY XPC-binding domain 235 298 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gabi636g00018 362 SUPERFAMILY Ubiquitin-like 1 91 IPR029071 -
Gabi636g00018 362 Gene3D - 134 183 - -
Gabi636g00018 362 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Gabi636g00018 362 SMART uba_6 140 180 IPR015940 -
Gabi636g00018 362 SMART uba_6 318 355 IPR015940 -
Gabi636g00018 362 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 351 - -
Gabi636g00018 362 SUPERFAMILY UBA-like 137 189 IPR009060 GO:0005515
Gabi636g00018 362 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Gabi636g00018 362 Gene3D - 310 358 - -
Gabi636g00018 362 SMART CBM 237 280 IPR006636 -
Gabi636g00018 362 Pfam XPC-binding domain 239 294 IPR015360 GO:0003684|GO:0006289|GO:0043161
Gabi636g00018 362 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 138 181 IPR015940 -
Gabi636g00018 362 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 315 356 IPR015940 -
Gabi636g00018 362 FunFam UV excision repair protein RAD23 1 80 - -
Gabi636g00018 362 PRINTS DNA repair protein Rad23 signature 344 359 IPR004806 GO:0006289
Gabi636g00018 362 PRINTS DNA repair protein Rad23 signature 329 343 IPR004806 GO:0006289
Gabi636g00018 362 PRINTS DNA repair protein Rad23 signature 312 328 IPR004806 GO:0006289
Gabi636g00018 362 PRINTS DNA repair protein Rad23 signature 265 287 IPR004806 GO:0006289
Gabi636g00018 362 SMART ubq_7 1 75 IPR000626 GO:0005515
Gabi636g00018 362 Pfam UBA/TS-N domain 320 353 IPR015940 -
Gabi636g00018 362 Pfam UBA/TS-N domain 140 178 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi636g00018 Gabi-Chr636 98035 104623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi636g00018 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.838 1.22e-06 46.2