Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi636g00017 ATGAAGATTAACGTCAAGACTCTCAAGGGGACTCACTTTGAGATCGAAGTGAAACCACAAGACACGGTTGCTGATGTGAAGAAAAACATAGAGGTAGTTCAAGGTGTGGATGTTTACCCTGCTGCACAGCAAATGCTTATTCATAAGGGAAAAGTGCTTAAAGATGCCACAACCCTGGAAGAAAATGAAGTTGCTGAGAATAGTTTGATGGTGATCATGTTATCCAAGAATAAGGTATCATCAAGTGGAGCCTCAACTGCTTCACCTGCACCCTCAAACCTGGCAGCCCAACCTGCAAGTTCTTTGCCTCCAACTTCATCAACATCTTCAGCATCTCAACCTCCTGCTTCGACTGTAGGACAGGGAGAATCCAATTCTGAGCAAAGTCCTGTTATTACTCCTCCCACTACTGCAGTGCCCAGCATCTATGGCCAAGCAGGGTCAGATGTCATTGCTGGAAATAATTTAGAATCAACTATTCAACAGATTCTAGAAATGGGAGGAGGAAGTTGGGATCGGGATACTGTTATCCGTGCTCTTCGTGCTGCATTTAACAATCCTGAAAGAGCTGTTGAATATCTCTATTCTGGCATTCCTGAACAAGCTGATGTCCCGGCAGTTGCTAGATCCCCCACCATTGGGCAGGAAGCAAACCCTTTAGTCCAGGCTCTGCAACCAGCTCTACCTACTAGTGGGCCTAACACCAACCCGCTCAACCTGTTCCCCGAGGGCATTCCCGATGGTGCAAATGATGCGGGGGACTTGGATTTCTTGCGGAACAGTCAGCAGTTCCAAGCCTTGAGAGCGATGGTGCAAGCAAACCCCCAAATTTTACAGCCCATGCTTCAGGAACTGGGAAAACAAAATCCCCACCTAATGCAGCTCATCCAAGAGCATCAAGCTGACTTCTTACGCCTTATAAATGAACCTGAAGGAGAAGAAGTCAGTTGGCTTCTGAGATGCCTCAAGCCATCACCATCACCCCTGAGGAGCATGATGCCATTCAACGGCTTGAAGACATGGGATTTGATCGAGATCTTGTGTTGGAGGTGTTCTTTGCATGCAATAAAAACGAGGATTTGGCAGCCAACTATCTATTGGATCACCAGAATGAATTTGAGGACTAGTTAA 1131 0.4651 MKINVKTLKGTHFEIEVKPQDTVADVKKNIEVVQGVDVYPAAQQMLIHKGKVLKDATTLEENEVAENSLMVIMLSKNKVSSSGASTASPAPSNLAAQPASSLPPTSSTSSASQPPASTVGQGESNSEQSPVITPPTTAVPSIYGQAGSDVIAGNNLESTIQQILEMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQADVPAVARSPTIGQEANPLVQALQPALPTSGPNTNPLNLFPEGIPDGANDAGDLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEHQADFLRLINEPEGEEVSWLLRCLKPSPSPLRSMMPFNGLKTWDLIEILCWRCSLHAIKTRIWQPTIYWITRMNLRTS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi636g00017 376 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Gabi636g00017 376 MobiDBLite consensus disorder prediction 81 139 - -
Gabi636g00017 376 SUPERFAMILY UBA-like 153 205 IPR009060 GO:0005515
Gabi636g00017 376 SUPERFAMILY Ubiquitin-like 1 91 IPR029071 -
Gabi636g00017 376 Gene3D - 150 199 - -
Gabi636g00017 376 SMART uba_6 156 196 IPR015940 -
Gabi636g00017 376 FunFam UV excision repair protein RAD23 homolog 149 199 - -
Gabi636g00017 376 NCBIfam UV excision repair protein Rad23 1 313 IPR004806 GO:0006289
Gabi636g00017 376 Pfam UBA/TS-N domain 156 194 IPR015940 -
Gabi636g00017 376 Gene3D - 246 311 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gabi636g00017 376 FunFam UV excision repair protein RAD23 1 80 - -
Gabi636g00017 376 CDD UBA1_Rad23_plant 150 199 - -
Gabi636g00017 376 Pfam XPC-binding domain 255 310 IPR015360 GO:0003684|GO:0006289|GO:0043161
Gabi636g00017 376 FunFam UV excision repair protein RAD23 B 247 311 - -
Gabi636g00017 376 CDD Ubl_Rad23 1 74 - -
Gabi636g00017 376 SMART CBM 253 296 IPR006636 -
Gabi636g00017 376 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 154 197 IPR015940 -
Gabi636g00017 376 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Gabi636g00017 376 SUPERFAMILY XPC-binding domain 251 314 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gabi636g00017 376 Gene3D - 1 80 - -
Gabi636g00017 376 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 318 - -
Gabi636g00017 376 SMART ubq_7 1 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi636g00017 Gabi-Chr636 98035 104624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi636g00017 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.838 7.44e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi636g00017 K10839 - jre:108987071 423.32