Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi62g00001 ATGGGGTTTTCAATAGCTATAGGAGAAGCTGAACAACAAGAGCAAGAGACAAAGTTTTTAGGTTCTTCTTTGATCATGGCTTCGAGTGTTAAGAGCACCAACTCAACAACTACTCAACTTGAACCACCCGCACCACTCTCACATCTTCATCATCATCTTCATCACCATCATCAACAACCACAACATCATCATCAAATACAAGACAACCAAATCTCTTTTGGAATGATGCCATTTTCTTCATCGCCCTCTATCCCCGGAAACTACTTAAGCAAAGATTCTGGACCTTATGATTTGGGTGAATTGGATCAAGCCTTTTTTTTGTATCTTGATGGACAAGCTGACCCTTCAAGTGTTCAAGACCAAAAACAGGATTCATCTTCAGGAATGAGGCCACCACCAACTCTCAACATTTTCCCATCTCAGCCTATGCACGTAGAGCCGCCACCACCATCCAATTCCAAGGCTAGCATGGAATTACCTTCTCCACAAACCAGTTCTAAGAGACCATCAGAGCCGTCCATAGAGTTGGCCAACCCACGAAATGAAGCAGCTTCTGCACCTGAACAACCCAAACCTGTAAAGCGAGAGAGCAATCGCAAGGGAACAACATCAAGTTCTGAACAGGAAGGACCCAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAGGCAGCAAGGAAAAGCAGGCTTAGGAAAAAGGCGTATGTTCAGCAACTAGAGTCAAGTAGGATTAAGCTTAATCAGCTAGAACAAGAGTTACAGCGTGCTAGATCTCAAGGCATAATCATGGGAGGAGGTGCAGTTTTGGGAGGGGAGCAAGGCCTTCCTCTCACTATGGGTAGCATTAGCTCAGAGGCTGCAATGTTTGACATGGAATATGCGAGATGGTTAGATGAGCACCATCGTCTAGTGTGTGAGCTAAGAGCTGCAATCCAAGAACACCTTCATGAAAATGAGCTTAGGCTATTTGTGGATAATATCTTGGCTCATTATGATCAAGTAATGAACCTCAAAAGCTTAGTGGCCAAAACAGATGTGTTTCACCTTGTTTTTGGCATGTGGAAGACGCCAGCTGAACGTTGCTTCATGTGGATCGGTGGGTTTAGGCCATCTGAACTCATTAAGATTATTCTAAGCCAAATTGAGCCTCTTACGGAGCAACAAATACTTGGGATATGTGGGTTGCAACAATCAACCCAAGAGGCAGAAGAAGCTCTTTCTCAAGGGCTTGAAGCACTCAATCAATCACTCTTAGACACTATAACATCAGATTCATTGAGTTTTCCTCCAAATATGGCTAACTACATGGGACAAATGGCGGTGGCCATGAACAAGCTCTCTACCCTTGAAGGTTTTGTGAGACAGGCAGATAATCTGAGGCACCAAACCATTCTCCGCCTGCATCAGCTACTTACAACACGTCAAGCCGCAAGGTGTTTGGTGGCCATGTCTGAGTACTTTCATCGTCTAAGAGCCCTGAGCTCTCTATGGATGACACGCCCTCGCCAAGAATAG 1527 0.4473 MGFSIAIGEAEQQEQETKFLGSSLIMASSVKSTNSTTTQLEPPAPLSHLHHHLHHHHQQPQHHHQIQDNQISFGMMPFSSSPSIPGNYLSKDSGPYDLGELDQAFFLYLDGQADPSSVQDQKQDSSSGMRPPPTLNIFPSQPMHVEPPPPSNSKASMELPSPQTSSKRPSEPSIELANPRNEAASAPEQPKPVKRESNRKGTTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQELQRARSQGIIMGGGAVLGGEQGLPLTMGSISSEAAMFDMEYARWLDEHHRLVCELRAAIQEHLHENELRLFVDNILAHYDQVMNLKSLVAKTDVFHLVFGMWKTPAERCFMWIGGFRPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLLDTITSDSLSFPPNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTILRLHQLLTTRQAARCLVAMSEYFHRLRALSSLWMTRPRQE 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi62g00001 508 ProSiteProfiles DOG1 domain profile. 290 504 IPR025422 GO:0006351|GO:0043565
Gabi62g00001 508 FunFam BZIP family transcription factor 216 265 - -
Gabi62g00001 508 PANTHER TRANSCRIPTION FACTOR TGA9 135 507 - -
Gabi62g00001 508 Pfam Seed dormancy control 308 382 IPR025422 GO:0006351|GO:0043565
Gabi62g00001 508 CDD bZIP_HBP1b-like 217 269 - -
Gabi62g00001 508 MobiDBLite consensus disorder prediction 135 155 - -
Gabi62g00001 508 Gene3D - 216 265 - -
Gabi62g00001 508 MobiDBLite consensus disorder prediction 30 66 - -
Gabi62g00001 508 MobiDBLite consensus disorder prediction 114 134 - -
Gabi62g00001 508 Pfam bZIP transcription factor 217 256 IPR004827 GO:0003700|GO:0006355
Gabi62g00001 508 SUPERFAMILY Leucine zipper domain 217 259 IPR046347 GO:0003700|GO:0006355
Gabi62g00001 508 MobiDBLite consensus disorder prediction 114 220 - -
Gabi62g00001 508 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 220 235 IPR004827 GO:0003700|GO:0006355
Gabi62g00001 508 MobiDBLite consensus disorder prediction 156 172 - -
Gabi62g00001 508 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 215 259 IPR004827 GO:0003700|GO:0006355
Gabi62g00001 508 Coils Coil 236 263 - -
Gabi62g00001 508 SMART brlzneu 213 266 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi62g00001 Gabi-Chr62 39938 47118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi62g00001 86 508 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 64.786 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi62g00001 DOG1 5.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi62g00001 K14431 - gmx:100800059 753.051