Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00160 ATGACTTTTGCTCAGTGTTCAATTTCCGACATGTTACAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGATTTGCTTTTGTCTACATGGAAGACGAACGTGATGCTGAGTATGCAATCAGAAGACTTGATAGAACAGAATTTGGTAGAAAGGGGCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGCCAGGTGATTCAAGAAAATCTTCAACAAATACGAAACCATCCAAGACTTTGTTTGTTATAAATTTTGATCCAGTTCACACCAGGACAAGGGATTTGGAGAGACACTTTGATCCCTATGGGAAAATATTGAATATAAGGATCAGAAGGAATTTTTCTTTTATTCAGTATGAATCCCAGGAGGATGCTACTAGAGCTTTGGATGCAACTAACCTAAGCAAGTTTATGGATCGTGTTATCACTGTGGAGTATGCTATAAGAGATGATGATGACAGAAGGAATGGATATAGTCCTGATAGAAGAGGTAATGACTCCCCTGATGGAAGATATGGTCGTGGCAGATCCCCAAGTCCATATCGTAGAGGTAGAGGTAGCCCAGATTATGGTCATGGATCAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGTGCTGAAAGCCCAATAAATGGGAGATATGACAGCCGGTCTCCCCCACCCCGAGATAGGTCGCGATCCTGA 717 0.431 MTFAQCSISDMLQHRNHDDFATVAGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRPGDSRKSSTNTKPSKTLFVINFDPVHTRTRDLERHFDPYGKILNIRIRRNFSFIQYESQEDATRALDATNLSKFMDRVITVEYAIRDDDDRRNGYSPDRRGNDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERAESPINGRYDSRSPPPRDRSRS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00160 238 MobiDBLite consensus disorder prediction 61 82 - -
Gabi629g00160 238 Gene3D - 67 203 IPR012677 -
Gabi629g00160 238 MobiDBLite consensus disorder prediction 61 75 - -
Gabi629g00160 238 MobiDBLite consensus disorder prediction 158 238 - -
Gabi629g00160 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 148 IPR000504 GO:0003723
Gabi629g00160 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 52 IPR000504 GO:0003723
Gabi629g00160 238 SUPERFAMILY RNA-binding domain, RBD 24 159 IPR035979 GO:0003676
Gabi629g00160 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 63 IPR000504 GO:0003723
Gabi629g00160 238 SMART rrm1_1 85 151 IPR000504 GO:0003723
Gabi629g00160 238 Gene3D - 7 66 IPR012677 -
Gabi629g00160 238 MobiDBLite consensus disorder prediction 209 238 - -
Gabi629g00160 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 155 IPR000504 GO:0003723
Gabi629g00160 238 FunFam Serine/arginine-rich splicing factor RS31 76 166 - -
Gabi629g00160 238 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 22 99 - -
Gabi629g00160 238 MobiDBLite consensus disorder prediction 158 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00160 Gabi-Chr629 1694446 1697452 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00160 25 158 Eukaryotic Initiation Factors Gene Family AT1G49760 27.778 2.50e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00160 K12893 - gmx:100797778 367.851