Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00159 ATGAGGCCCGTCTTTTGTGGAAACCTGGATTTCGACGCTCGCCAATCTGATGTTGAGAGGCTTTTCAGAAGATACGGGAAGGTTGATAGAGTGGACATGAAATCTGGATTTGCTTTTGTCTACATGGAAGACGAACGTGATGCTGAGTATGCAATCAGAAGACTTGATAGAACAGAATTTGGTAGAAAGGGGCGCCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGCCAGGTGATTCAAGAAAATCTTCAACAAATACGAAACCATCCAAGACTTTGTTTGTTATAAATTTTGATCCAGTTCACACCAGGACAAGGGATTTGGAGAGACACTTTGATCCCTATGGGAAAATATTGAATATAAGGATCAGAAGGAATTTTTCTTTTATTCAGTATGAATCCCAGGAGGATGCTACTAGAGCTTTGGATGCAACTAACCTAAGCAAGTTTATGGATCGTGTTATCACTGTGGAGTATGCTATAAGAGATGATGATGACAGAAGGAATGGATATAGTCCTGATAGAAGAGGTAATGACTCCCCTGATGGAAGATATGGTCGTGGCAGATCCCCAAGTCCATATCGTAGAGGTAGAGGTAGCCCAGATTATGGTCATGGATCAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGTGCTGAAAGCCCAATAAATGGGAGATATGACAGCCGGTCTCCCCCACCCCGAGATAGGTCGCGATCCTGA 750 0.44 MRPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRPGDSRKSSTNTKPSKTLFVINFDPVHTRTRDLERHFDPYGKILNIRIRRNFSFIQYESQEDATRALDATNLSKFMDRVITVEYAIRDDDDRRNGYSPDRRGNDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERAESPINGRYDSRSPPPRDRSRS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00159 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Gabi629g00159 249 MobiDBLite consensus disorder prediction 169 187 - -
Gabi629g00159 249 FunFam Serine/arginine-rich splicing factor RS31 87 177 - -
Gabi629g00159 249 MobiDBLite consensus disorder prediction 169 249 - -
Gabi629g00159 249 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 243 - -
Gabi629g00159 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Gabi629g00159 249 SUPERFAMILY RNA-binding domain, RBD 2 170 IPR035979 GO:0003676
Gabi629g00159 249 Gene3D - 78 228 IPR012677 -
Gabi629g00159 249 MobiDBLite consensus disorder prediction 72 93 - -
Gabi629g00159 249 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Gabi629g00159 249 MobiDBLite consensus disorder prediction 220 249 - -
Gabi629g00159 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Gabi629g00159 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Gabi629g00159 249 Gene3D - 1 77 IPR012677 -
Gabi629g00159 249 SMART rrm1_1 96 162 IPR000504 GO:0003723
Gabi629g00159 249 SMART rrm1_1 3 70 IPR000504 GO:0003723
Gabi629g00159 249 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00159 Gabi-Chr629 1694170 1697450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00159 4 169 Eukaryotic Initiation Factors Gene Family AT1G49760 24.590 5.09e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00159 K12893 - gmx:100797778 437.573