Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00158 ATGGCAGGAACTGAAGCTACAAAATATGCTTCTGCTACGAACAACATGGCAAAATCGAACAAACCCATTATGAGGAGGTTCATTGGGGTGAGGCAAAGGCCTTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCTTCTCAGCATGTGAGGTTATGGCTTGGAACCTATGACACACCAGAAGAAGCTGCTAGAGCTTATGATGAAGCAGCTCGAGCTTTGCGTGGTGAAAATGCCCGAACCAACTTTGCATCATCATCATCGGTGAACCAAACCACAAACCAATCAGGTTCTGTTCCTTCTTCTGATGGGAAACATGGTTTAAGCTTTGCTTCCTTGAAAGCCAAGTTAAGCAAGAATCTTCAGAGCATTATGGCCAGAGCAAGTGACAGCAAGTCCTCAAAGAGTAGAGTGAGTGATCACTTTACCTTTGCTAGCATATTCCATCGTGGGAATTACCAATACCAAATCCCTTCAGTGGATATGAAAAGCATTGAGAAAGTGGTGCAGCCTAGTATTATTGTTCCCCCTGTAGAGGGTGATCACCCTGTTGTTTGGGAAACCTCTAGTGTTTCTGATTGTAGCTCTGAGTGGGTCGGGTTTAGGCAACCCGGTTTGGACTCTGATGGGTCGGATATTGGGGATGTTAGTGTTGGTGATCAAGGGTACTTGGATCAACTAATGGGATGGGTTGATAGCCCTGATTTTTGTGCAAGTGAAGGTTCAAGGAGTAAGAGGTTTAAGGTCTCTTCTTCTGTGCTTGTTCCCCCAACTTTCACTGGGTCTCCTTTTGATTGTGGCTCCCCTTATAGTGGTTATGCCTCTCCTTATAATGGTTGTGGCTCCCCATGTAATGGTTATGCCTCTACATATGATGGTAGGAAATGA 885 0.4531 MAGTEATKYASATNNMAKSNKPIMRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFASSSSVNQTTNQSGSVPSSDGKHGLSFASLKAKLSKNLQSIMARASDSKSSKSRVSDHFTFASIFHRGNYQYQIPSVDMKSIEKVVQPSIIVPPVEGDHPVVWETSSVSDCSSEWVGFRQPGLDSDGSDIGDVSVGDQGYLDQLMGWVDSPDFCASEGSRSKRFKVSSSVLVPPTFTGSPFDCGSPYSGYASPYNGCGSPCNGYASTYDGRK 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00158 294 FunFam ethylene-responsive transcription factor RAP2-11 25 84 - -
Gabi629g00158 294 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Gabi629g00158 294 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Gabi629g00158 294 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Gabi629g00158 294 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Gabi629g00158 294 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Gabi629g00158 294 MobiDBLite consensus disorder prediction 81 104 - -
Gabi629g00158 294 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Gabi629g00158 294 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Gabi629g00158 294 SUPERFAMILY DNA-binding domain 27 84 IPR016177 GO:0003677
Gabi629g00158 294 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00158 Gabi-Chr629 1687439 1688323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00158 13 84 AP2-EREBP Transcription Factor Family AT5G19790 65.278 3.34e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi629g00158 AP2 1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00158 K09286 - qsa:O6P43_017554 386.341