Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00156 ATGATGGGTTCAGGTACTAATTTGGTTACTACAGTCATTGGGTTTGGATTGAGTGCAACTTTCATTGTGTTTGTCTGCACAAGAATAATCTGTGGAAGACTAAGAGAGCGTGTGGGATCAAGGACTATATATGAGATTGAATCAAGAACTGATATAGAACGGCCAGAACATCTTGTTAGTGACCCTGAACCTGCTTTTGTTGCTGCAATTCCCACTTTGAAGTTCAATCAAGAGGCCTTTTCTTCCATTGAAAGTACACAGTGTGTGATATGTTTGGCAGAGTACAAAGAAAAAGAGTTATTGCGCATTATACCTAAATGTGGCCACAGTTTTCATCTTTCTTGCATTGATACATGGTTGAGAAAACAATCTACATGTCCTGTATGCCGTTTACCGCTGCAGAATGCTTCTGAAACAAAACATGTGAGACCTGTAACATTTACCATCAACCAATCTCTTGATGAGTCTAATACTTCAGAAAGGAACACTGTTAATGAGAGACAAGTTGAACCTATTGCTAGTAACTCCTTACAATTAACTGCCGGAGAACCAGAAGCAAGGGAGTGA 567 0.3951 MMGSGTNLVTTVIGFGLSATFIVFVCTRIICGRLRERVGSRTIYEIESRTDIERPEHLVSDPEPAFVAAIPTLKFNQEAFSSIESTQCVICLAEYKEKELLRIIPKCGHSFHLSCIDTWLRKQSTCPVCRLPLQNASETKHVRPVTFTINQSLDESNTSERNTVNERQVEPIASNSLQLTAGEPEARE 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00156 188 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Gabi629g00156 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 140 IPR013083 -
Gabi629g00156 188 Pfam Ring finger domain 87 130 IPR001841 -
Gabi629g00156 188 MobiDBLite consensus disorder prediction 151 181 - -
Gabi629g00156 188 SMART ring_2 88 129 IPR001841 -
Gabi629g00156 188 CDD RING-H2_EL5-like 87 130 - -
Gabi629g00156 188 PANTHER OS11G0150450 PROTEIN 1 165 - -
Gabi629g00156 188 SUPERFAMILY RING/U-box 79 136 - -
Gabi629g00156 188 MobiDBLite consensus disorder prediction 151 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00156 Gabi-Chr629 1671085 1673077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00156 64 137 C3H Transcription Factor Family AT4G33565 43.243 1.10e-19 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00156 - - gmx:100780922 299.286