Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00142 ATGGACAATTATGGGTCTTCATCACCATATGGGTATCCAAACCCATATTTATACCCTGGCAACACTCCTCCATATCCACCTCCAGCTTCAGGTGCTGATCCATATGCACCTACTCCTTATCCATATCCACCCAATCCTTCACATTCCTTCAACTATTCCAATCCACAACCTCCTCCACCACCCTCCTCCTCAGCCCCTTATCCTAGCCACATAGACTATTCCTACCCCCCACCTCCTCAACCATCTTATACTTATCCTTACCCTTACCAAGTTCCTCCAACTAGTGATAGTTCAAACCCTCCTCATAGTTCTGCTTACCCTCCTTTGGATGATCTTATGAGCAATGTTAGGTTGTCTGATAATCAGCAAACTGCAACTGCACCTCCTGTGCATCTATTCACACATTCTATTTCAGTTACAGATCATGAGAGGAGAGAGGAGTTTCATGGCTATTCTAGTAACTCCTTCTCTGGTTTGGGATCCTCCTACCCTGGTCAGGGGGATTCTTCTAAGCTTTCAGCTTATTCTGGCTCATTTGATGACTCAGTGCATAGTCAGAGTTTGCAGATTGTTCCAGCACAGGACAAAGGGTCTTTGAGGGTTTTGCTCCTGCATGGGACAATGAGTAAGATTACCAGTGATCCTTATGTATCAATTTCTGTATCAAATGCTGTTATTGGGAGGACTTTTGTGATTAGCAACAGTGAGAACCCTGTGTGGGAGCAACATTTTTATGTTCCTGTTGCACATCATGCTGCTGAAGTGCACTTTCTTGTTAAGGACAGTGATGTGGTGGGTTCACAGCTCATTGGGATTGTGGCAATTCCTGTGGAACAAATATACTCAGGGGGAAAAGTACAAGGGACCTACCCTATCCTGAATAACAATGGGAAGCCTTGTAAGCCAGGTGCTATCTTGAGTCTATCAATTCAGTACATTCCAATGGAGAAACTGAGTTTTTATCATCAAGGAGTTGGAGCAGGACCTGACTATATTGGGGTTCCTGGCACATATTTTCCATTGAGGAAAGGTGGAACTGTTAATCTCTATCAAGATGCACATGTTCCAGATGGTTGCCTCCCCAATGTGAGGCTTGACAATGGAATGTATTATGCTCATGGAAAGTGTTGGCTTGACATCTTTGATGCTATTCGTCAAGCTCAGCGTTTGATTTACATTACTGGGTGGTCAGTGTGGCACCAAGTTAAGTTGGTAAGGGATGCTGGTCATGCATCAAATTTCACACTGGGTGATCTTCTGAGGTCTAAGTCACAGGAAGGAGTACGAGTTCTTCTCCTTGTCTGGGATGACCCCACGTCAAGAAGCATTCTCGGTTATAACACAGATGGTGTCATGGCAACTCATGATGAAGAAACTCGACGATTTTTCAAGCACTCCTCTGTGCAAGTGCTGCTTTGTCCTCGCATTGCCGGAAAACGACATAGCTGGGTCAAGCAAAGGGAAGTTGGAACAATATATACACATCATCAGAAAACTGTAATTGTGGATGCTGATGCTGGAAATAACAGAAGAAAAATCATAGCATTTGTTGGTGGACTTGATTTGTGTGATGGGCGATATGATACTCCCAACCATCCTCTCTTTAGGACACTGCAGACATTTCATAAGGATGACTATCACAACCCAACTTTCACGGGTAATGTTGGTGGTTGTCCCCGGGAGCCATGGCATGACTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTGACCAACTTTGAGGAGCGCTGGTTAAGAGCTGCAAAGCCTCAAGGGATAAAAAAATTGAAGACTTCATACGATGATGCGTTGCTTAGGCTAGAAAGAATCCCGGATATTATCCACATGTCGGATGCTCCTAGTGGAGGTGGTGATAATCCTGAAGCTTGGCATGTTCAGATATTTCGTTCAATTGATTCAAATTCTGTTAAGGGGTTTCCAAAGGAGCCAAAAGATGCATCAAGCAAGAACCTAGTATGTGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTAAAGGCCATTCGTGCTGCACAACATTACATTTATATAGAGAATCAATATTTCATTGGGTCTTCATACAATTGGAATCAAAATAAAGACATTGGTGCTAATAATTTAATTCCAATGGAAATTGCGCTGAAGATTGCTGAAAAGATAAGGGCAAAGGAGAGATTTGCAGTGTACATCATTATTCCAATGTGGCCAGAGGGGGTTCCAACAGGGGCTGCGACCCAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTACGAGACAATTTATAAGGCTTTGGTTGAAGCTGGGCTTGAAGCAGCATATTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGCAATCGGGAGGCCATTGATATGCATGAGAATATCCCTGTGTCTGGAACTCCACCCCAAGCAAATAGCCCACAAGCAAATAGTCGAAATAGCCGGCGTTTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTGATATTGGGATCTGCAAACATCAACCAGCGCTCTATGGAAGGAACAAGGGACACTGAGATTGCAATGGGAGCCTACCAACCTCGTCATACCTGGGCAAGAAAACATTCTTATCCACATGGACAGATCCATGGATATAGGATGTCACTTTGGGCAGAACATACAGGCACAATTGAAGACTGCTTCTTACAACCAGAGAGTCTGGAATGTGTGAGAAGGGTTAGAACAATGGGTGAACTGAACTGGAAACAATTTTCAGAAAATGAAGTAACAGAGATGAGAGGGCATCTACTCAAGTACCCAGTAGAAGTTGATAGAAAGGGTAAGGTTAGGTCACTTCCTGGCCAAGAAGAGTTCCCTGATGTGGGAGGAAAAATAGTAGGATCATTTATTGCCATTCAGGAAAATCTAACCACTTGA 2943 0.4305 MDNYGSSSPYGYPNPYLYPGNTPPYPPPASGADPYAPTPYPYPPNPSHSFNYSNPQPPPPPSSSAPYPSHIDYSYPPPPQPSYTYPYPYQVPPTSDSSNPPHSSAYPPLDDLMSNVRLSDNQQTATAPPVHLFTHSISVTDHERREEFHGYSSNSFSGLGSSYPGQGDSSKLSAYSGSFDDSVHSQSLQIVPAQDKGSLRVLLLHGTMSKITSDPYVSISVSNAVIGRTFVISNSENPVWEQHFYVPVAHHAAEVHFLVKDSDVVGSQLIGIVAIPVEQIYSGGKVQGTYPILNNNGKPCKPGAILSLSIQYIPMEKLSFYHQGVGAGPDYIGVPGTYFPLRKGGTVNLYQDAHVPDGCLPNVRLDNGMYYAHGKCWLDIFDAIRQAQRLIYITGWSVWHQVKLVRDAGHASNFTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYNTDGVMATHDEETRRFFKHSSVQVLLCPRIAGKRHSWVKQREVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPNHPLFRTLQTFHKDDYHNPTFTGNVGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRAAKPQGIKKLKTSYDDALLRLERIPDIIHMSDAPSGGGDNPEAWHVQIFRSIDSNSVKGFPKEPKDASSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWNQNKDIGANNLIPMEIALKIAEKIRAKERFAVYIIIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEAGLEAAYSPQDYLNFFCLGNREAIDMHENIPVSGTPPQANSPQANSRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPRHTWARKHSYPHGQIHGYRMSLWAEHTGTIEDCFLQPESLECVRRVRTMGELNWKQFSENEVTEMRGHLLKYPVEVDRKGKVRSLPGQEEFPDVGGKIVGSFIAIQENLTT 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00142 980 ProSiteProfiles C2 domain profile. 180 290 IPR000008 -
Gabi629g00142 980 MobiDBLite consensus disorder prediction 16 88 - -
Gabi629g00142 980 SUPERFAMILY Phospholipase D/nuclease 649 912 - -
Gabi629g00142 980 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 196 315 IPR035892 -
Gabi629g00142 980 Gene3D Endonuclease Chain A 639 881 - -
Gabi629g00142 980 PANTHER PHOSPHOLIPASE D 207 976 IPR015679 -
Gabi629g00142 980 SUPERFAMILY Phospholipase D/nuclease 371 590 - -
Gabi629g00142 980 CDD C2_plant_PLD 184 313 - -
Gabi629g00142 980 Pfam Phospholipase D Active site motif 492 526 IPR001736 GO:0003824
Gabi629g00142 980 Gene3D C2 domain 192 320 IPR035892 -
Gabi629g00142 980 SMART pld_4 826 853 IPR001736 GO:0003824
Gabi629g00142 980 SMART pld_4 491 526 IPR001736 GO:0003824
Gabi629g00142 980 Gene3D Endonuclease Chain A 368 608 - -
Gabi629g00142 980 FunFam Phospholipase D 639 872 - -
Gabi629g00142 980 MobiDBLite consensus disorder prediction 144 163 - -
Gabi629g00142 980 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 826 853 IPR001736 GO:0003824
Gabi629g00142 980 MobiDBLite consensus disorder prediction 89 104 - -
Gabi629g00142 980 MobiDBLite consensus disorder prediction 1 112 - -
Gabi629g00142 980 Pfam Phospholipase D C terminal 900 970 IPR024632 -
Gabi629g00142 980 Pfam C2 domain 210 292 IPR000008 -
Gabi629g00142 980 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 491 526 IPR001736 GO:0003824
Gabi629g00142 980 SMART C2_3c 198 289 IPR000008 -
Gabi629g00142 980 FunFam Phospholipase D delta 367 605 - -
Gabi629g00142 980 Pfam PLD-like domain 677 862 IPR025202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00142 Gabi-Chr629 1553502 1561914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00142 36 979 Phospholipase D Gene Family (Wang group) AT2G42010 68.321 0.0 1403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00142 K01115 - gmx:100791059 1546.56