Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00140 ATGGACAATTATGGGTCTTCATCACCATATGGGTATCCAAACCCATATTTATACCCTGGCAACACTCCTCCATATCCACCTCCAGCTTCAGGTGCTGATCCATATGCACCTACTCCTTATCCATATCCACCCAATCCTTCACATTCCTTCAACTATTCCAATCCACAACCTCCTCCACCACCCTCCTCCTCAGCCCCTTATCCTAGCCACATAGACTATTCCTACCCCCCACCTCCTCAACCATCTTATACTTATCCTTACCCTTACCAAGTTCCTCCAACTAGTGATAGTTCAAACCCTCCTCATAGTTCTGCTTACCCTCCTTTGGATGATCTTATGAGCAATGTTAGGTTGTCTGATAATCAGCAAACTGCAACTGCACCTCCTGTGCATCTATTCACACATTCTATTTCAGTTACAGATCATGAGAGGAGAGAGGAGTTTCATGGCTATTCTAGTAACTCCTTCTCTGGTTTGGGATCCTCCTACCCTGGTCAGGGGGATTCTTCTAAGCTTTCAGCTTATTCTGGCTCATTTGATGACTCAGTGCATAGTCAGAGTTTGCAGATTGTTCCAGCACAGGACAAAGGGTCTTTGAGGGTTTTGCTCCTGCATGGTAATTTAGATATATGTGTTCATGGAGCCAAAAATCTTCCCAATATGGACATGTTCCATAAAACTCTAGGGGATATGTTTGGTAAGTTACCTGGTAATATGGGAAGTAAGATTGAAGGGACAATGAGTAAGATTACCAGTGATCCTTATGTATCAATTTCTGTATCAAATGCTGTTATTGGGAGGACTTTTGTGATTAGCAACAGTGAGAACCCTGTGTGGGAGCAACATTTTTATGTTCCTGTTGCACATCATGCTGCTGAAGTGCACTTTCTTGTTAAGGACAGTGATGTGGTGGGTTCACAGCTCATTGGGATTGTGGCAATTCCTGTGGAACAAATATACTCAGGGGGAAAAGTACAAGGGACCTACCCTATCCTGAATAACAATGGGAAGCCTTGTAAGCCAGGTGCTATCTTGAGTCTATCAATTCAGTACATTCCAATGGAGAAACTGAGTTTTTATCATCAAGGAGTTGGAGCAGGACCTGACTATATTGGGGTTCCTGGCACATATTTTCCATTGAGGAAAGGTGGAACTGTTAATCTCTATCAAGATGCACATGTTCCAGATGGTTGCCTCCCCAATGTGAGGCTTGACAATGGAATGTATTATGCTCATGGAAAGTGTTGGCTTGACATCTTTGATGCTATTCGTCAAGCTCAGCGTTTGATTTACATTACTGGGTGGTCAGTGTGGCACCAAGTTAAGTTGGTAAGGGATGCTGGTCATGCATCAAATTTCACACTGGGTGATCTTCTGAGGTCTAAGTCACAGGAAGGAGTACGAGTTCTTCTCCTTGTCTGGGATGACCCCACGTCAAGAAGCATTCTCGGTTATAACACAGATGGTGTCATGGCAACTCATGATGAAGAAACTCGACGATTTTTCAAGCACTCCTCTGTGCAAGTGCTGCTTTGTCCTCGCATTGCCGGAAAACGACATAGCTGGGTCAAGCAAAGGGAAGTTGGAACAATATATACACATCATCAGAAAACTGTAATTGTGGATGCTGATGCTGGAAATAACAGAAGAAAAATCATAGCATTTGTTGGTGGACTTGATTTGTGTGATGGGCGATATGATACTCCCAACCATCCTCTCTTTAGGACACTGCAGACATTTCATAAGGATGACTATCACAACCCAACTTTCACGGGTAATGTTGGTGGTTGTCCCCGGGAGCCATGGCATGACTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTGACCAACTTTGAGGAGCGCTGGTTAAGAGCTGCAAAGCCTCAAGGGATAAAAAAATTGAAGACTTCATACGATGATGCGTTGCTTAGGCTAGAAAGAATCCCGGATATTATCCACATGTCGGATGCTCCTAGTGGAGGTGGTGATAATCCTGAAGCTTGGCATGTTCAGATATTTCGTTCAATTGATTCAAATTCTGTTAAGGGGTTTCCAAAGGAGCCAAAAGATGCATCAAGCAAGAACCTAGTATGTGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTAAAGGCCATTCGTGCTGCACAACATTACATTTATATAGAGAATCAATATTTCATTGGGTCTTCATACAATTGGAATCAAAATAAAGACATTGGTGCTAATAATTTAATTCCAATGGAAATTGCGCTGAAGATTGCTGAAAAGATAAGGGCAAAGGAGAGATTTGCAGTGTACATCATTATTCCAATGTGGCCAGAGGGGGTTCCAACAGGGGCTGCGACCCAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTACGAGACAATTTATAAGGCTTTGGTTGAAGCTGGGCTTGAAGCAGCATATTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGCAATCGGGAGGCCATTGATATGCATGAGAATATCCCTGTGTCTGGAACTCCACCCCAAGCAAATAGCCTTGTTAAGGCAAATAGTCGAAATAGCCGGCGTTTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTGATATTGGGATCTGCAAACATCAACCAGCGCTCTATGGAAGGAACAAGGGACACTGAGATTGCAATGGGAGCCTACCAACCTCGTCATACCTGGGCAAGAAAACATTCTTATCCACATGGACAGATCCATGGATATAGGATGTCACTTTGGGCAGAACATACAGGCACAATTGAAGACTGCTTCTTACAACCAGAGAGTCTGGAATGTGTGAGAAGGGTTAGAACAATGGGTGAACTGAACTGGAAACAATTTTCAGAAAATGAAGTAACAGAGATGAGAGGGCATCTACTCAAGTACCCAGTAGAAGTTGATAGAAAGGGTAAGGTTAGGTCACTTCCTGGCCAAGAAGAGTTCCCTGATGTGGGAGGAAAAATAGTAGGATCATTTATTGCCATTCAGGAAAATCTAACCACTTGA 3063 0.427 MDNYGSSSPYGYPNPYLYPGNTPPYPPPASGADPYAPTPYPYPPNPSHSFNYSNPQPPPPPSSSAPYPSHIDYSYPPPPQPSYTYPYPYQVPPTSDSSNPPHSSAYPPLDDLMSNVRLSDNQQTATAPPVHLFTHSISVTDHERREEFHGYSSNSFSGLGSSYPGQGDSSKLSAYSGSFDDSVHSQSLQIVPAQDKGSLRVLLLHGNLDICVHGAKNLPNMDMFHKTLGDMFGKLPGNMGSKIEGTMSKITSDPYVSISVSNAVIGRTFVISNSENPVWEQHFYVPVAHHAAEVHFLVKDSDVVGSQLIGIVAIPVEQIYSGGKVQGTYPILNNNGKPCKPGAILSLSIQYIPMEKLSFYHQGVGAGPDYIGVPGTYFPLRKGGTVNLYQDAHVPDGCLPNVRLDNGMYYAHGKCWLDIFDAIRQAQRLIYITGWSVWHQVKLVRDAGHASNFTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYNTDGVMATHDEETRRFFKHSSVQVLLCPRIAGKRHSWVKQREVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPNHPLFRTLQTFHKDDYHNPTFTGNVGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRAAKPQGIKKLKTSYDDALLRLERIPDIIHMSDAPSGGGDNPEAWHVQIFRSIDSNSVKGFPKEPKDASSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWNQNKDIGANNLIPMEIALKIAEKIRAKERFAVYIIIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEAGLEAAYSPQDYLNFFCLGNREAIDMHENIPVSGTPPQANSLVKANSRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPRHTWARKHSYPHGQIHGYRMSLWAEHTGTIEDCFLQPESLECVRRVRTMGELNWKQFSENEVTEMRGHLLKYPVEVDRKGKVRSLPGQEEFPDVGGKIVGSFIAIQENLTT 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00140 1020 Gene3D C2 domain 201 339 IPR035892 -
Gabi629g00140 1020 FunFam Phospholipase D 678 912 - -
Gabi629g00140 1020 MobiDBLite consensus disorder prediction 16 88 - -
Gabi629g00140 1020 Pfam C2 domain 206 331 IPR000008 -
Gabi629g00140 1020 Gene3D Endonuclease Chain A 678 921 - -
Gabi629g00140 1020 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 530 565 IPR001736 GO:0003824
Gabi629g00140 1020 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 866 893 IPR001736 GO:0003824
Gabi629g00140 1020 PANTHER PHOSPHOLIPASE D 198 1016 IPR015679 -
Gabi629g00140 1020 SMART C2_3c 207 328 IPR000008 -
Gabi629g00140 1020 SMART pld_4 866 893 IPR001736 GO:0003824
Gabi629g00140 1020 SMART pld_4 530 565 IPR001736 GO:0003824
Gabi629g00140 1020 Gene3D Endonuclease Chain A 407 647 - -
Gabi629g00140 1020 MobiDBLite consensus disorder prediction 144 163 - -
Gabi629g00140 1020 SUPERFAMILY Phospholipase D/nuclease 688 952 - -
Gabi629g00140 1020 MobiDBLite consensus disorder prediction 89 104 - -
Gabi629g00140 1020 FunFam Phospholipase D delta 201 347 - -
Gabi629g00140 1020 ProSiteProfiles C2 domain profile. 184 329 IPR000008 -
Gabi629g00140 1020 FunFam Phospholipase D delta 406 644 - -
Gabi629g00140 1020 MobiDBLite consensus disorder prediction 1 112 - -
Gabi629g00140 1020 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 354 IPR035892 -
Gabi629g00140 1020 Pfam PLD-like domain 716 902 IPR025202 -
Gabi629g00140 1020 Pfam Phospholipase D Active site motif 531 565 IPR001736 GO:0003824
Gabi629g00140 1020 SUPERFAMILY Phospholipase D/nuclease 410 629 - -
Gabi629g00140 1020 Pfam Phospholipase D C terminal 940 1010 IPR024632 -
Gabi629g00140 1020 CDD C2_plant_PLD 201 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00140 Gabi-Chr629 1553502 1561914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00140 36 1019 Phospholipase D Gene Family (Wang group) AT2G42010 70.722 0.0 1472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00140 K01115 - gmx:100791059 1625.91