Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00138 ATGTCTCAACTTGCTCAGCAAGAGAATAATGCAAATGGAGCGATGACACAGTGGACTAGGGAAGACGACATTGCCTTTGAAGACGCCCTCGCCATCATCCCAACAGGCATGCCTGAGCCAGAGTATTGGGAGAAAGTAGCCGCTCTTGTCCCTGGAAAATCACCGGCGGAGGTCCGAAATTATTATTGGGTATTGTTCCATGGCTTGTTAGAGATTGAGACGGGTCGAGTGCCGTTACCGCACTTGTTGCTGGTGCCGATGGAGGCCAACAGATGTAACTGTGAAAAGAAGAGGTTGACATGGACAGAAGAGGAACACAGGTTATTTCTCGCTGGGCTGCAGATAATTGGCAAGGGAGATTGGAAAAACATTGCTAGATATTTTGTTAAGACAAAAAATGCAACACAAATTGCTAGTCATGCCCAAAAATACTCCCTTCATCTCGCTCAAGGTGCCCAAAAGAAGGAAAGGAAAAGAACAAGCATCCATGACATAACCTTAAATGCTGAAATCGACATTGTGGTTCCTGCTGATGATGTTCAAGTTCTTCAACACTTACAAAAATTGCAACAGGCACAGCAATTGAGGGACACACAATAA 600 0.45 MSQLAQQENNANGAMTQWTREDDIAFEDALAIIPTGMPEPEYWEKVAALVPGKSPAEVRNYYWVLFHGLLEIETGRVPLPHLLLVPMEANRCNCEKKRLTWTEEEHRLFLAGLQIIGKGDWKNIARYFVKTKNATQIASHAQKYSLHLAQGAQKKERKRTSIHDITLNAEIDIVVPADDVQVLQHLQKLQQAQQLRDTQ 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00138 199 NCBIfam myb-like DNA-binding domain, SHAQKYF class 96 147 IPR006447 GO:0003677
Gabi629g00138 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 149 IPR017930 -
Gabi629g00138 199 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 14 170 IPR043363 -
Gabi629g00138 199 CDD SANT 100 144 IPR001005 -
Gabi629g00138 199 ProSiteProfiles Myb-like domain profile. 93 145 IPR001005 -
Gabi629g00138 199 Pfam Myb-like DNA-binding domain 17 62 IPR001005 -
Gabi629g00138 199 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Gabi629g00138 199 FunFam Transcription factor SRM1 10 79 - -
Gabi629g00138 199 CDD SANT 18 66 IPR001005 -
Gabi629g00138 199 Gene3D - 16 67 - -
Gabi629g00138 199 SMART sant 14 68 IPR001005 -
Gabi629g00138 199 SMART sant 97 147 IPR001005 -
Gabi629g00138 199 SUPERFAMILY Homeodomain-like 6 74 IPR009057 -
Gabi629g00138 199 Gene3D - 99 150 - -
Gabi629g00138 199 SUPERFAMILY Homeodomain-like 94 148 IPR009057 -
Gabi629g00138 199 ProSiteProfiles Myb-like domain profile. 10 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00138 Gabi-Chr629 1538737 1540191 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi629g00138 Myb_DNA-binding 5.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00138 - - nta:107769058 148.673