Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00135 ATGGTGAGAGGAAAAACTCAAATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTGACCTTCTCAAAGAGGCGTAATGGGTTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGTGATGCTGAGATTGCTCTTATCGTCTTCTCTACAAGAGGGAAGCTTTATGAATTTGCAAGCTCCAGTATGCAGCAGACAATTGAACGATACCGCAGGACAAGGGATAATACTCCAACAGCGTTCAGATCAGATGAACAAAATATGCAGCATTTGAAGGAAGAAGCAGCAAGCATGATGAAGAACATTGACCTCCTTGAAGCTTCAAAACGGAAACTCATGGGAGAAGATTTGGGGTCTTGCTCCATTGAAGAACTGCAACAGATAGAACAACAGTTGGAGAGGAGTGTAAGCAATGTTCGAGCAAGAAAGACTCAGATTTTCATGGAACAAATTGAGCAACTAAAAGAAAGGGAAAATGCCCTAGTTGCTGAAAATTCCAGGCTTTCTGAGAAGCATGGTAACTTTCCACAGCCAGAACCAAAGGATCAGAGAGAAAATCAACCTCAACCCTTTGCAGAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGACTTCCAGATACAAGAACAAGGTGTGGTGCATCTTTCCTCAGGTCTAGTTGA 669 0.432 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEIALIVFSTRGKLYEFASSSMQQTIERYRRTRDNTPTAFRSDEQNMQHLKEEAASMMKNIDLLEASKRKLMGEDLGSCSIEELQQIEQQLERSVSNVRARKTQIFMEQIEQLKERENALVAENSRLSEKHGNFPQPEPKDQRENQPQPFAESSPSSDVETELFIGLPDTRTRCGASFLRSS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00135 222 Coils Coil 121 141 - -
Gabi629g00135 222 Coils Coil 80 107 - -
Gabi629g00135 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi629g00135 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi629g00135 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi629g00135 222 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Gabi629g00135 222 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Gabi629g00135 222 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi629g00135 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Gabi629g00135 222 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
Gabi629g00135 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi629g00135 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi629g00135 222 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Gabi629g00135 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi629g00135 222 MobiDBLite consensus disorder prediction 166 208 - -
Gabi629g00135 222 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi629g00135 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi629g00135 222 Coils Coil 150 170 - -
Gabi629g00135 222 MobiDBLite consensus disorder prediction 179 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00135 Gabi-Chr629 1449774 1470011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00135 1 156 MADS-box Gene Family AT2G45660 77.070 5.08e-82 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi629g00135 K-box 7.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00135 - - gmx:100807963 312.768