Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00132 ATGGTGAGAGGAAAAACTCAAATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTGACCTTCTCAAAGAGGCGTAATGGGTTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGTGATGCTGAGATTGCTCTTATCGTCTTCTCTACAAGAGGGAAGCTTTATGAATTTGCAAGCTCCAGTATGCAGCAGACAATTGAACGATACCGCAGGACAAGGGATAATACTCCAACAGCGTTCAGATCAGATGAACAAAATATGCAGCATTTGAAGGAAGAAGCAGCAAGCATGATGAAGAACATTGACCTCCTTGAAGCTTCAAAACGGAAACTCATGGGAGAAGATTTGGGGTCTTGCTCCATTGAAGAACTGCAACAGATAGAACAACAGTTGGAGAGGAGTGTAAGCAATGTTCGAGCAAGAAAGACTCAGATTTTCATGGAACAAATTGAGCAACTAAAAGAAAGGGAAAATGCCCTAGTTGCTGAAAATTCCAGGCTTTCTGAGAAGCCAGAACCAAAGGATCAGAGAGAAAATCAACCTCAACCCTTTGCAGAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGACTTCCAGATACAAGAACAAGGTGTGGTGCATCTTTCCTCAGGTCTAGTTGA 651 0.4316 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEIALIVFSTRGKLYEFASSSMQQTIERYRRTRDNTPTAFRSDEQNMQHLKEEAASMMKNIDLLEASKRKLMGEDLGSCSIEELQQIEQQLERSVSNVRARKTQIFMEQIEQLKERENALVAENSRLSEKPEPKDQRENQPQPFAESSPSSDVETELFIGLPDTRTRCGASFLRSS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00132 216 Coils Coil 121 141 - -
Gabi629g00132 216 Coils Coil 80 107 - -
Gabi629g00132 216 MobiDBLite consensus disorder prediction 164 179 - -
Gabi629g00132 216 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
Gabi629g00132 216 MobiDBLite consensus disorder prediction 164 202 - -
Gabi629g00132 216 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi629g00132 216 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Gabi629g00132 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi629g00132 216 MobiDBLite consensus disorder prediction 180 194 - -
Gabi629g00132 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Gabi629g00132 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi629g00132 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi629g00132 216 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Gabi629g00132 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi629g00132 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi629g00132 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi629g00132 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi629g00132 216 Coils Coil 150 170 - -
Gabi629g00132 216 ProSiteProfiles K-box domain profile. 87 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi629g00132 216 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00132 Gabi-Chr629 1449774 1470011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00132 1 156 MADS-box Gene Family AT2G45660 77.070 2.20e-82 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi629g00132 K-box 2.9e-28 No_clan