Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00127 ATGGTGAGAGGAAAAACTCAAATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTGACCTTCTCAAAGAGGCGTAATGGGTTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGTGATGCTGAGATTGCTCTTATCGTCTTCTCTACAAGAGGGAAGCTTTATGAATTTGCAAGCTCCAGCATGCAGCAGACAATTGAACGATACCGCAGGCATACAAGGGATAATACTCCAACAGCATTCAGATCTATGCAGCATTTGAAGGAAGAAGCAGCAAGCATGATGAAGAACATTGACCTCCTTGAAGCTTCAAAACGGAAACTCATGGGAGAAGATTTGGGGTCTTGCTCCATTGAAGAACTGCAACAGATAGAACAACAGTTGGAGAGGAGTGTAAGCAATGTTCGAGCAAGAAAGACTCAGATTTTCAAGGAACAAATTAAGCAACTAAAAGAAAGGGAAAATGTCCTAGTTGCTGAAAATTCCAGGCTTTCTAAGAAGCATGGTAACTTTCCACAGCCAGCAACAAAGGATCAGAGAGAACATCAACCTCAACCCTATGCAGAAAGTAGTCCAAGTACAGATGTGGAGACTGAATTGTTCATTGGACTTCCAGATACAAGAACAAGGTGTGGTGCATCTTTCCTCAGGTCTAGTTAA 660 0.4303 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEIALIVFSTRGKLYEFASSSMQQTIERYRRHTRDNTPTAFRSMQHLKEEAASMMKNIDLLEASKRKLMGEDLGSCSIEELQQIEQQLERSVSNVRARKTQIFKEQIKQLKERENVLVAENSRLSKKHGNFPQPATKDQREHQPQPYAESSPSTDVETELFIGLPDTRTRCGASFLRSS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00127 219 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Gabi629g00127 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi629g00127 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi629g00127 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi629g00127 219 Coils Coil 84 104 - -
Gabi629g00127 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Gabi629g00127 219 MobiDBLite consensus disorder prediction 160 200 - -
Gabi629g00127 219 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Gabi629g00127 219 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi629g00127 219 Coils Coil 147 167 - -
Gabi629g00127 219 MobiDBLite consensus disorder prediction 176 197 - -
Gabi629g00127 219 Pfam K-box region 83 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi629g00127 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi629g00127 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi629g00127 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi629g00127 219 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Gabi629g00127 219 Coils Coil 118 138 - -
Gabi629g00127 219 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
Gabi629g00127 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00127 Gabi-Chr629 1345512 1359440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00127 1 153 MADS-box Gene Family AT2G45660 76.282 1.16e-83 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi629g00127 K-box 5.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00127 - - gmx:100807963 308.916