Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00088 ATGCCTTCCTTAAATAGACGATCTCTCTCAGAAAAATATGAAGCTTGGTTCTATGAAGAGTATGGTCCTAAGGAAGTCCTTAAGCTGGGGATTTTACCTATTCCTACTCCTCAGCATAACCAACTACTTGTCCAAGTTCATGCTGCTGCTTTGAATCCAATTGATGTCAAGAGGCGTCAATCTCCCATCTTTCCTTCTGACTTTCCAGCGGTTCCTGGCTGTGACATGGCTGGTGTGGTGATAGGAAAAGGTGTTGATGTTACAAAATTTGATATAGGTGATGAGGTTTATGGCAACATCCAAGATTTCAACAATGGGGAAAAACCAAAGCAGCTTGGAACTTTGGCACAGTTCATTGTTGTGGAAGAGAGCTTGGTTTCAAGAAAACCAAAATGCCTTTCATTTGAGGAGGCTGCAAGCTTGCCTTTGGCACTTCAGACAGCAATAGAAGGCTTCACAACTGCAGGTTTTAAGAAGGGCCAGACAATATTTGTGGTTGGTGGAGCAGGTGGGGTTGGAACTTTAGTGGTTCAGCTAGCCAAACACTTCTATGGAGCTTCTTATGTTGTGGCTAGTTGTAGCACCCCAAAACTGGAATTTGTAAAACAGTTAGGTGCTGATAAAGTGGTGGACTATACAAAGACTAAATATGAAGACATTGAGGAGAAATTTGACTTTCTTTATGACACAATTGGTGACTGCAAGAAATCTTTTGTTGTAGCAAAGAATGATGGAGCAATAGTTGACATAACATGGCCTCCATCACATCCAAGAGCAGTTTATTCAAGCTTGACAGTGTCTGGGGAAAGCTTGGAAAAGCTTAGGCCATATTTGGAATGCAAAAAGCTCAAACCTGAAATTGATCCCACAGGTCCATATCATTTTAACGATGTAATTGAGGCTTTCCGATATTTAGAAACTGGAAGAGCTAGGGGAAAAGTTGTTGTCTCTTGCTTCCCTTTGGTGGATCCTCACTCTCCCATTTTATCTAGGGTCAATTCCAAGATAGGAGTTAATGGCCTCTCAGAGGATATTTACATGAAGTAG 1047 0.4155 MPSLNRRSLSEKYEAWFYEEYGPKEVLKLGILPIPTPQHNQLLVQVHAAALNPIDVKRRQSPIFPSDFPAVPGCDMAGVVIGKGVDVTKFDIGDEVYGNIQDFNNGEKPKQLGTLAQFIVVEESLVSRKPKCLSFEEAASLPLALQTAIEGFTTAGFKKGQTIFVVGGAGGVGTLVVQLAKHFYGASYVVASCSTPKLEFVKQLGADKVVDYTKTKYEDIEEKFDFLYDTIGDCKKSFVVAKNDGAIVDITWPPSHPRAVYSSLTVSGESLEKLRPYLECKKLKPEIDPTGPYHFNDVIEAFRYLETGRARGKVVVSCFPLVDPHSPILSRVNSKIGVNGLSEDIYMK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00088 348 SUPERFAMILY GroES-like 13 165 IPR011032 -
Gabi629g00088 348 CDD MDR_like_2 15 316 - -
Gabi629g00088 348 Gene3D - 20 316 - -
Gabi629g00088 348 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 5 318 IPR044626 GO:0016628
Gabi629g00088 348 Pfam Alcohol dehydrogenase GroES-like domain 40 99 IPR013154 -
Gabi629g00088 348 Pfam Zinc-binding dehydrogenase 204 316 - -
Gabi629g00088 348 SMART PKS_ER_names_mod 22 316 IPR020843 GO:0016491
Gabi629g00088 348 Gene3D - 152 267 - -
Gabi629g00088 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 133 286 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00088 Gabi-Chr629 832495 834669 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00088 40 231 Monolignol Biosynthesis Gene Families AT3G19450 26.027 6.42e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00088 K18980 - cit:102609064 506.908