Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00081 ATGTCGGTGACTCTGCACACAAACCTAGGCGACATCAAGTGCGAAATCTTCTGCGACGAGGTTCCTAAGACCTCCGAGAATTTTTTAGCGTTATGTGCAAGTGGTTACTATGATGGGACTATATTTCACCGCAACATCAAAGGTTTTATGATTCAAGGTGGAGACCCAACTGGTACTGGCAAAGGAGGGACCAGTATATGGGGCAAGAAATTTAACGATGAGATAAGAGAATCTCTGAAGCACAATGCAAGGGGAATATTGGCAATGGCTAACAGTGGTCCAAATACTAATGGAAGTCAGTTCTTTTTAACTTACGCAAAGCAGCCACATTTGAATGGACTATATACTGTGTTTGGCAGAGTAATTCATGGATTTGAAGTTCTGGATCTCATGGAAAAGACTCAAACAGGGGCAGGGGACCGACCGCTTGCAGAGATAAGGCTCAATCGTGTGACACTACATGCTAACCCTCTTGCTGGTTAG 483 0.441 MSVTLHTNLGDIKCEIFCDEVPKTSENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILAMANSGPNTNGSQFFLTYAKQPHLNGLYTVFGRVIHGFEVLDLMEKTQTGAGDRPLAEIRLNRVTLHANPLAG 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00081 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Gabi629g00081 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Gabi629g00081 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Gabi629g00081 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Gabi629g00081 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413|GO:0003755
Gabi629g00081 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 152 IPR044666 -
Gabi629g00081 160 PIRSF Peptidylpro_ismrse 1 156 IPR024936 GO:0003755
Gabi629g00081 160 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413|GO:0003755
Gabi629g00081 160 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Gabi629g00081 160 FunFam Peptidyl-prolyl cis-trans isomerase 1 160 - -
Gabi629g00081 160 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 153 IPR002130 GO:0000413|GO:0003755
Gabi629g00081 160 Gene3D - 1 160 IPR029000 -
Gabi629g00081 160 SUPERFAMILY Cyclophilin-like 1 157 IPR029000 -
Gabi629g00081 160 CDD Cyclophilin_PPIL3_like 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00081 Gabi-Chr629 787783 790742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00081 3 157 U-box Gene Family AT5G67530 52.903 1.29e-54 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00081 K12734 - gmx:100306466 326.635