Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00074 ATGTATCTTTCAAAGGGTTGTAGGTGTGAAGTTGTTCTCTGCTTGTGGTTCTGTTGCTATTTGCTTCTCGCTGTTGGTCAGACTGACCCCACTGAAGTTGACGCATTGAGAACCATAAAGGAAAGTTTGATTGATGTTAATGGAAATTTGAGCAGCTGGAGTAACGGAGACCCATGTACATCTAATTGGACAGGGGTTTTGTGCTCCAGTACGACATTAGTCGATGGCTATCTACATGTTCAACAATTGCAACTACCGAACTTGAACTTGTCTGGAACTTTGGCCCCAGAGATTGGGCGCTTATCTTATCTGGAGATAATGGACTTTATGTGGAACAACATAAGTGGGAGTATACCGAAGGAAATTGGCAATATCAAAACTTTGAAACTCTTGCTCCTGAGTGGAAATCATTTAAGAGGTCTGTTGCCAGAAGAGCTTGGCTATCTTCCAGTCCTGGACAGAATGCAAATCGATCAGAACAATATTACAGGATCTATTCCTTCATCATTTGCAAACCTGAACAGCACACAGCACTTTCACATGAACAATAATTCACTCAGTGGACAAATCCCACCAAAGCTTTCTCGCTTAGGAAGCCTACTTCACCTTCTTCTTGACAACAACAAGTTATCAGGATATCTCCCCTCGGAGCTCTCTGAGATGCCAAGCTTAAAGATACTTCAACTTGACAACAATAATTTTGGTGGAAACAGCATTCCAGATTCTTATGTCAACATGTCAAAATTGTTGAAATTGAGCCTTAGGAACTGCAACTTGCAAGGACCGATTCCTGATTTAAGCAGGATACCAGACCTTGGTTATCTCGACCTCAGTTTCAATCAGTTGAATGAATCAATTCTTTCTAAGAAGCTTTCTGAAAATATCACTACCATTGATTTATCAAACAACAAGCTTACTGGAACTATTCCATCCTACTTTTCTGGTCTGCCACATCTTCAGAAATTGTCACTTGCAAACAATTCATTGAGTGGCAATATTCCTTCTAACATTTGGCAGAACAAGACTAATGCAACAGAAATGCTTCTCCTGGACATGCAAAATAATCAACTTACAAGCATATCAGGCAGTACAAATCTTCCTCCAAATGTCACAGTCTTGCTTGAGGGAAATCCTCTATGCTCAAATAATAACACCTTAGTTCAGTTCTGTGGAGCTGGAAGTGACAATGGCGTGAACAGTAGCTCCAGTGTCAGCTGTCCTAGTCAGGCATGCCCTCCTCCTTATGAATACAATGTGGAGTGTTTCTGTGCAGCCCCATTGATCATTGATTATCGGTTGAAAAGTCCAGGATTTTCAGATTTCCGTACTTACGTGGATGCATTTGAGAGCTTCCTGACAGATAGTCTTAACATACATATTAATCAGCTATTCATTAATAGTTTTGCATGGGAAGAAGGGCCTCGGTTGAGAATGTACTTGAAGCTTTTTCCTATATATGTTGACAATAGAAGCTCTCATATTTTCAATACAAGTGAGGTTTTTCGAATCAGAAACTTGTTCAGAGAGTGGACTATTCAAGACAGTGACTTGTTCGGGCCTTATGAACTTATAGACTTCATTCTCCTGGATCCTTACAGGGATGTGATTATCACTTCTCCAAGTTCAGGGATAAGCAAGGGTGCACTGGCTGGAATAGTTTTAGGTGCAATTGCAGGTGCAGTCACATTATCTGCAATTGTTTCCATTCTAATATTGAGAATACGCTTGAGAGATTACCGTGTGCTTTCCAGACGGCGTAATGCATCTAGGATCTCAATGAAATTTGATGGTGTAAGATCATTTGATTATGAAGAAATGGCCTTGGCTACAAACAATTTTAGTGACTCCGCAGAAGTTGGACAAGGGGGGTATGGAAAGGTTTATAAAGGTATTCTTTCTGATGGCACTCTTGTTGCCATAAAACGTGCACAGGAGGGATCACTGCAAGGTGAGATGGAGTTCCGTACAGAAATACATTTGCTATCAAGGGTACATCATCGCAACCTTGTGTCTCTGATTGGATACTGTGATGAAAAGGGTGAACAGATGCTGGTTTATGAATACATGCCCAATGGAACGCTGAGGGATCATCTTTCTGTTCATTCAAAAGAACCTCTTAGTTTTCCCATGAGATTGAAGATGGCTATAGGGTCAGCTAAAGGTCTTCTGTATCTACACACAGAAGCTGATCCTCCAATATTCCACCGGGATGTCAAGGCGAGCAATATATTGTTGGACTCTAAGTTCACAGCAAAAGTTGCTGATTTTGGACTTTCACGGCTTGCCCCGGTTCCAGATATTGAAGGAAATCTTCCTGGTCATGTATCTACAGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCTTAACTCACAAGTTGACTGATAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAACTTGTGACAGGGAGGCCACCAATATTTCATGGTGAAAATATTATTAGACAGGTTACTGTGGCGTTCCAATCTGGTGGAATCTTTTCGGTTGTTGATAAACGTATGGGGTCTTATCCTTCTGAGTGTTTGGGGAAATTTTTGACTTTGGCCTTAAAGTGTTGCGAAAATGCACCAGATGAACGGCCAAAAATGGCAGAAGTGGTTAGGGAGCTTGAAAACATCTGGTCTATGATATCTGAGTCCGATGCCAAGGGAGTTGAATATGTGGCAAGTGATTCTGGAACAATATTCAGTTCACCACATTCATCATCTACTCTAAAGACTCATTTAATTTCAGGAGATGTGTCGGGTAGTGACCTTGTTAGTGGAGATATACCAAGCATCAAGCCAAGATAG 2829 0.4118 MYLSKGCRCEVVLCLWFCCYLLLAVGQTDPTEVDALRTIKESLIDVNGNLSSWSNGDPCTSNWTGVLCSSTTLVDGYLHVQQLQLPNLNLSGTLAPEIGRLSYLEIMDFMWNNISGSIPKEIGNIKTLKLLLLSGNHLRGLLPEELGYLPVLDRMQIDQNNITGSIPSSFANLNSTQHFHMNNNSLSGQIPPKLSRLGSLLHLLLDNNKLSGYLPSELSEMPSLKILQLDNNNFGGNSIPDSYVNMSKLLKLSLRNCNLQGPIPDLSRIPDLGYLDLSFNQLNESILSKKLSENITTIDLSNNKLTGTIPSYFSGLPHLQKLSLANNSLSGNIPSNIWQNKTNATEMLLLDMQNNQLTSISGSTNLPPNVTVLLEGNPLCSNNNTLVQFCGAGSDNGVNSSSSVSCPSQACPPPYEYNVECFCAAPLIIDYRLKSPGFSDFRTYVDAFESFLTDSLNIHINQLFINSFAWEEGPRLRMYLKLFPIYVDNRSSHIFNTSEVFRIRNLFREWTIQDSDLFGPYELIDFILLDPYRDVIITSPSSGISKGALAGIVLGAIAGAVTLSAIVSILILRIRLRDYRVLSRRRNASRISMKFDGVRSFDYEEMALATNNFSDSAEVGQGGYGKVYKGILSDGTLVAIKRAQEGSLQGEMEFRTEIHLLSRVHHRNLVSLIGYCDEKGEQMLVYEYMPNGTLRDHLSVHSKEPLSFPMRLKMAIGSAKGLLYLHTEADPPIFHRDVKASNILLDSKFTAKVADFGLSRLAPVPDIEGNLPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELVTGRPPIFHGENIIRQVTVAFQSGGIFSVVDKRMGSYPSECLGKFLTLALKCCENAPDERPKMAEVVRELENIWSMISESDAKGVEYVASDSGTIFSSPHSSSTLKTHLISGDVSGSDLVSGDIPSIKPR 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00074 942 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 689 898 - -
Gabi629g00074 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 733 745 IPR008271 GO:0004672|GO:0006468
Gabi629g00074 942 FunFam Predicted protein 172 390 - -
Gabi629g00074 942 ProSiteProfiles Protein kinase domain profile. 613 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi629g00074 942 Pfam Leucine rich repeat 294 331 IPR001611 GO:0005515
Gabi629g00074 942 SMART LRR_typ_2 197 220 IPR003591 -
Gabi629g00074 942 SMART LRR_typ_2 269 294 IPR003591 -
Gabi629g00074 942 SMART LRR_typ_2 221 246 IPR003591 -
Gabi629g00074 942 SMART LRR_typ_2 316 340 IPR003591 -
Gabi629g00074 942 Gene3D Transferase(Phosphotransferase) domain 1 689 903 - -
Gabi629g00074 942 Gene3D Phosphorylase Kinase; domain 1 584 688 - -
Gabi629g00074 942 SUPERFAMILY Protein kinase-like (PK-like) 598 890 IPR011009 -
Gabi629g00074 942 CDD STKc_IRAK 619 885 - -
Gabi629g00074 942 Pfam Protein kinase domain 614 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi629g00074 942 SMART serkin_6 613 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi629g00074 942 SUPERFAMILY L domain-like 42 397 - -
Gabi629g00074 942 PANTHER RECEPTOR-LIKE PROTEIN 55 39 887 - -
Gabi629g00074 942 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Gabi629g00074 942 Gene3D Ribonuclease Inhibitor 29 290 IPR032675 -
Gabi629g00074 942 Gene3D Ribonuclease Inhibitor 291 382 IPR032675 -
Gabi629g00074 942 FunFam Leucine-rich repeat protein kinase family protein 578 688 - -
Gabi629g00074 942 ProSitePatterns Protein kinases ATP-binding region signature. 619 641 IPR017441 GO:0005524
Gabi629g00074 942 FunFam Leucine-rich repeat receptor-like kinase 31 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00074 Gabi-Chr629 700557 715311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00074 18 885 Receptor kinase-like Gene Family AT5G01950 57.758 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Gabi629g00074 Pkinase 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00074 - - gmx:100801035 1407.89