Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00050 ATGTGGGCAGATGTTGAAACAGATGAAGTTTATGCTCAAATGACACTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACATTAACTGCAAGTGACACCAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAAAAAGTTTTCCCTCCACTGGATTTTTCGCAGCAGCCACCTGCCCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACAACGGGGTGGAGTGTATTTGTTAGTGCCAAAAGACTCGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAAAAGAATCAGCTACTTTTGGGAATACGTCGTGCCAATCGACCACAAACTGTTTTGCCATCATCAGTTCTATCCAGTGATAGTATGCACATTGGCCTTCTTGCAGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACTGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATATGTGACCTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGATCTGTTAAGGTTGGTTGGGATGAATCAACAGCCGGAGAGAGACAGCCACGGGTATCTTTATGGGAAATTGAACCTTTAACAACATTTCCAATGTATCCATCACTATTTCCCCTCAGATTGAAACGCCCATGGCATCCTGGCACCTCATCTTTTCATGATGGCAGAGATGAAGCAACTAATGGGCTAATGTGGCTGAGAGGTGGACCTGGAGACCAAGGACTCAATTCCCTGAATTTTCAAGGTGCTGGTTTGTTGCCCTGGATGCAGCAGAGACTGGATCCAACTTTGCTTGGAAATGATCATAATCAGCAGCAGTACCAAGCCATGTTGGCTGCTGGTTTGCAGAACCTAGGGAGTGGAGATCTCTTGAGGCAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTCCTCTGCAACTTCAGCAGCAGCAAGCAATCCAGCAATCCGTATCTTCTAATATCCTGCAGCCACAAGCCCAAGTATTGGCAGAGAACCTGTCTCAGCACCTCCTTCATAAATCACACAACAATCGAGAAGACCAAACACAACAGCAGCAGCACACTTATCAAGATACGCTTTTAATTCAAAATGATCAGCTCCATCAGAGGCAACACTCTAGCTTGCCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCTTAAAGTTCTCTGCTTCAGTTTCGCCAGGGCAAAACATGCTTGGTTCACTTTGTCCAGAGGGGAGTGGCAATCTCTTGAATTTATCCAGAAGTGGTCAGTCCATGCTGACTGAACAGTTACCCCAACCATCATGGGCCCCAAAGTATTCATCTTTGCAGGTCAATGCCTTTGGCAACTCAATGTCAAATGTGCAATATTCCGGAAAAGATACTGCAATGGTTCCACCACATTGTAACTCAGATAACCAAAATCCTACTATATTCGGTGTCAATATCGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATGCTACTGCATCAGCCGATACTGATGCATCAACGATGTCATTAGGGGAGTCTGGATTCCAGGGTCCTCTATATGCTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCAAGATGACCCCCAAAACCAGACACGAACATATGTCAAGGTTTACAAAGCAGGTTCAGTAGGGCGCTCACTTGACATCTCCCGGTTCAGCAGCTATCATGAACTGCGAGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGTAAATTTGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTCAATAATGTTTGGTATATCAAAATACTTTCACCAGAAGAAATGCAGAAAATGGGAGAACAAGCCATAGAATCCCTTGGTCCAAGTTCAGGAGAAAGGCTGAACAGCACTGGTGCAGAATCTCATGACATTGTTTCTGGACTACCATCAATAGGCTCACTTGAATACTGA 2283 0.4481 MWADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVLPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLMWLRGGPGDQGLNSLNFQGAGLLPWMQQRLDPTLLGNDHNQQQYQAMLAAGLQNLGSGDLLRQQMMNFQQPFNYLQQSGNPNPPLQLQQQQAIQQSVSSNILQPQAQVLAENLSQHLLHKSHNNREDQTQQQQHTYQDTLLIQNDQLHQRQHSSLPSPSYSKPDFLDSSLKFSASVSPGQNMLGSLCPEGSGNLLNLSRSGQSMLTEQLPQPSWAPKYSSLQVNAFGNSMSNVQYSGKDTAMVPPHCNSDNQNPTIFGVNIDSSGLLLPTTVPRYATASADTDASTMSLGESGFQGPLYACMQDSSELLQSAGQDDPQNQTRTYVKVYKAGSVGRSLDISRFSSYHELREELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEEMQKMGEQAIESLGPSSGERLNSTGAESHDIVSGLPSIGSLEY 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00050 760 ProSiteProfiles PB1 domain profile. 634 718 IPR000270 GO:0005515
Gabi629g00050 760 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 723 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi629g00050 760 FunFam Auxin response factor 208 280 - -
Gabi629g00050 760 ProSiteProfiles B3 DNA-binding domain profile. 44 146 IPR003340 GO:0003677
Gabi629g00050 760 SMART B3_2 44 146 IPR003340 GO:0003677
Gabi629g00050 760 FunFam Auxin response factor 42 146 - -
Gabi629g00050 760 Gene3D - 630 723 - -
Gabi629g00050 760 MobiDBLite consensus disorder prediction 732 747 - -
Gabi629g00050 760 Pfam Auxin response factor 170 253 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi629g00050 760 Pfam B3 DNA binding domain 44 145 IPR003340 GO:0003677
Gabi629g00050 760 CDD B3_DNA 43 144 IPR003340 GO:0003677
Gabi629g00050 760 SUPERFAMILY DNA-binding pseudobarrel domain 28 173 IPR015300 -
Gabi629g00050 760 MobiDBLite consensus disorder prediction 385 404 - -
Gabi629g00050 760 Gene3D - 208 280 - -
Gabi629g00050 760 Pfam AUX/IAA family 627 719 IPR033389 -
Gabi629g00050 760 Gene3D - 42 145 IPR015300 -
Gabi629g00050 760 FunFam Auxin response factor 629 723 - -
Gabi629g00050 760 MobiDBLite consensus disorder prediction 730 760 - -
Gabi629g00050 760 SUPERFAMILY CAD & PB1 domains 633 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00050 Gabi-Chr629 421820 431665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00050 14 731 B3 DNA Binding Superfamily AT5G37020 69.093 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi629g00050 AUX_IAA 1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00050 - - gmx:100784804 1382.47