Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00049 ATGACACTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACATTAACTGCAAGTGACACCAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAAAAAGTTTTCCCTCCACTGGATTTTTCGCAGCAGCCACCTGCCCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACAACGGGGTGGAGTGTATTTGTTAGTGCCAAAAGACTCGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAAAAGAATCAGCTACTTTTGGGAATACGTCGTGCCAATCGACCACAAACTGTTTTGCCATCATCAGTTCTATCCAGTGATAGTATGCACATTGGCCTTCTTGCAGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACTGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATATGTGACCTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGATCTGTTAAGGTTGGTTGGGATGAATCAACAGCCGGAGAGAGACAGCCACGGGTATCTTTATGGGAAATTGAACCTTTAACAACATTTCCAATGTATCCATCACTATTTCCCCTCAGATTGAAACGCCCATGGCATCCTGGCACCTCATCTTTTCATGATGGCAGAGATGAAGCAACTAATGGGCTAATGTGGCTGAGAGGTGGACCTGGAGACCAAGGACTCAATTCCCTGAATTTTCAAGGTGCTGGTTTGTTGCCCTGGATGCAGCAGAGACTGGATCCAACTTTGCTTGGAAATGATCATAATCAGCAGCAGTACCAAGCCATGTTGGCTGCTGGTTTGCAGAACCTAGGGAGTGGAGATCTCTTGAGGCAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTCCTCTGCAACTTCAGCAGCAGCAAGCAATCCAGCAATCCGTATCTTCTAATATCCTGCAGCCACAAGCCCAAGTATTGGCAGAGAACCTGTCTCAGCACCTCCTTCATAAATCACACAACAATCGAGAAGACCAAACACAACAGCAGCAGCACACTTATCAAGATACGCTTTTAATTCAAAATGATCAGCTCCATCAGAGGCAACACTCTAGCTTGCCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCTTAAAGTTCTCTGCTTCAGTTTCGCCAGGGCAAAACATGCTTGGTTCACTTTGTCCAGAGGGGAGTGGCAATCTCTTGAATTTATCCAGAAGTGGTCAGTCCATGCTGACTGAACAGTTACCCCAACCATCATGGGCCCCAAAGTATTCATCTTTGCAGGTCAATGCCTTTGGCAACTCAATGTCAAATGTGCAATATTCCGGAAAAGATACTGCAATGGTTCCACCACATTGTAACTCAGATAACCAAAATCCTACTATATTCGGTGTCAATATCGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATGCTACTGCATCAGCCGATACTGATGCATCAACGATGTCATTAGGGGAGTCTGGATTCCAGGGTCCTCTATATGCTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCAAGATGACCCCCAAAACCAGACACGAACATATGTCAAGGTTTACAAAGCAGGTTCAGTAGGGCGCTCACTTGACATCTCCCGGTTCAGCAGCTATCATGAACTGCGAGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGTAAATTTGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTCAATAATGTTTGGTATATCAAAATACTTTCACCAGAAGAAATGCAGAAAATGGGAGAACAAGCCATAGAATCCCTTGGTCCAAGTTCAGGAGAAAGGCTGAACAGCACTGGTGCAGAATCTCATGACATTGTTTCTGGACTACCATCAATAGGCTCACTTGAATACTGA 2244 0.4492 MTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVLPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLMWLRGGPGDQGLNSLNFQGAGLLPWMQQRLDPTLLGNDHNQQQYQAMLAAGLQNLGSGDLLRQQMMNFQQPFNYLQQSGNPNPPLQLQQQQAIQQSVSSNILQPQAQVLAENLSQHLLHKSHNNREDQTQQQQHTYQDTLLIQNDQLHQRQHSSLPSPSYSKPDFLDSSLKFSASVSPGQNMLGSLCPEGSGNLLNLSRSGQSMLTEQLPQPSWAPKYSSLQVNAFGNSMSNVQYSGKDTAMVPPHCNSDNQNPTIFGVNIDSSGLLLPTTVPRYATASADTDASTMSLGESGFQGPLYACMQDSSELLQSAGQDDPQNQTRTYVKVYKAGSVGRSLDISRFSSYHELREELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEEMQKMGEQAIESLGPSSGERLNSTGAESHDIVSGLPSIGSLEY 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00049 747 ProSiteProfiles B3 DNA-binding domain profile. 31 133 IPR003340 GO:0003677
Gabi629g00049 747 MobiDBLite consensus disorder prediction 719 734 - -
Gabi629g00049 747 FunFam Auxin response factor 195 267 - -
Gabi629g00049 747 Pfam B3 DNA binding domain 31 132 IPR003340 GO:0003677
Gabi629g00049 747 ProSiteProfiles PB1 domain profile. 621 705 IPR000270 GO:0005515
Gabi629g00049 747 Gene3D - 195 267 - -
Gabi629g00049 747 FunFam Auxin response factor 616 710 - -
Gabi629g00049 747 Pfam AUX/IAA family 614 706 IPR033389 -
Gabi629g00049 747 SUPERFAMILY DNA-binding pseudobarrel domain 15 160 IPR015300 -
Gabi629g00049 747 MobiDBLite consensus disorder prediction 717 747 - -
Gabi629g00049 747 Pfam Auxin response factor 157 240 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi629g00049 747 Gene3D - 29 132 IPR015300 -
Gabi629g00049 747 CDD B3_DNA 30 131 IPR003340 GO:0003677
Gabi629g00049 747 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 710 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi629g00049 747 Gene3D - 617 710 - -
Gabi629g00049 747 SMART B3_2 31 133 IPR003340 GO:0003677
Gabi629g00049 747 FunFam Auxin response factor 29 133 - -
Gabi629g00049 747 SUPERFAMILY CAD & PB1 domains 620 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00049 Gabi-Chr629 421770 431664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00049 1 718 B3 DNA Binding Superfamily AT5G37020 69.093 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi629g00049 AUX_IAA 1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00049 - - gmx:100784804 1360.13