Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00048 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAATGTTTGAATTCTGAGCTATGGCATGCATGCGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGGCACATACCCAATTACCCGAGCTTGCCACCCCAGTTGATTTGCCAACTTCACAACGTTACAATGCATGCAGATGTTGAAACAGATGAAGTTTATGCTCAAATGACACTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACATTAACTGCAAGTGACACCAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAAAAAGTTTTCCCTCCACTGGATTTTTCGCAGCAGCCACCTGCCCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACAACGGGGTGGAGTGTATTTGTTAGTGCCAAAAGACTCGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAAAAGAATCAGCTACTTTTGGGAATACGTCGTGCCAATCGACCACAAACTGTTTTGCCATCATCAGTTCTATCCAGTGATAGTATGCACATTGGCCTTCTTGCAGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACTGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATATGTGACCTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGATCTGTTAAGGTTGGTTGGGATGAATCAACAGCCGGAGAGAGACAGCCACGGGTATCTTTATGGGAAATTGAACCTTTAACAACATTTCCAATGTATCCATCACTATTTCCCCTCAGATTGAAACGCCCATGGCATCCTGGCACCTCATCTTTTCATGATGGCAGAGATGAAGCAACTAATGGGCTAATGTGGCTGAGAGGTGGACCTGGAGACCAAGGACTCAATTCCCTGAATTTTCAAGGTGCTGGTTTGTTGCCCTGGATGCAGCAGAGACTGGATCCAACTTTGCTTGGAAATGATCATAATCAGCAGCAGTACCAAGCCATGTTGGCTGCTGGTTTGCAGAACCTAGGGAGTGGAGATCTCTTGAGGCAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTCCTCTGCAACTTCAGCAGCAGCAAGCAATCCAGCAATCCGTATCTTCTAATATCCTGCAGCCACAAGCCCAAGTATTGGCAGAGAACCTGTCTCAGCACCTCCTTCATAAATCACACAACAATCGAGAAGACCAAACACAACAGCAGCAGCACACTTATCAAGATACGCTTTTAATTCAAAATGATCAGCTCCATCAGAGGCAACACTCTAGCTTGCCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCTTAAAGTTCTCTGCTTCAGTTTCGCCAGGGCAAAACATGCTTGGTTCACTTTGTCCAGAGGGGAGTGGCAATCTCTTGAATTTATCCAGAAGTGGTCAGTCCATGCTGACTGAACAGTTACCCCAACCATCATGGGCCCCAAAGTATTCATCTTTGCAGGTCAATGCCTTTGGCAACTCAATGTCAAATGTGCAATATTCCGGAAAAGATACTGCAATGGTTCCACCACATTGTAACTCAGATAACCAAAATCCTACTATATTCGGTGTCAATATCGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATGCTACTGCATCAGCCGATACTGATGCATCAACGATGTCATTAGGGGAGTCTGGATTCCAGGGTCCTCTATATGCTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCAAGATGACCCCCAAAACCAGACACGAACATATGTCAAGGTTTACAAAGCAGGTTCAGTAGGGCGCTCACTTGACATCTCCCGGTTCAGCAGCTATCATGAACTGCGAGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGTAAATTTGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTCAATAATGTTTGGTATATCAAAATACTTTCACCAGAAGAAATGCAGAAAATGGGAGAACAAGCCATAGAATCCCTTGGTCCAAGTTCAGGAGAAAGGCTGAACAGCACTGGTGCAGAATCTCATGACATTGTTTCTGGACTACCATCAATAGGCTCACTTGAATACTGA 2535 0.4536 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVLPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLMWLRGGPGDQGLNSLNFQGAGLLPWMQQRLDPTLLGNDHNQQQYQAMLAAGLQNLGSGDLLRQQMMNFQQPFNYLQQSGNPNPPLQLQQQQAIQQSVSSNILQPQAQVLAENLSQHLLHKSHNNREDQTQQQQHTYQDTLLIQNDQLHQRQHSSLPSPSYSKPDFLDSSLKFSASVSPGQNMLGSLCPEGSGNLLNLSRSGQSMLTEQLPQPSWAPKYSSLQVNAFGNSMSNVQYSGKDTAMVPPHCNSDNQNPTIFGVNIDSSGLLLPTTVPRYATASADTDASTMSLGESGFQGPLYACMQDSSELLQSAGQDDPQNQTRTYVKVYKAGSVGRSLDISRFSSYHELREELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEEMQKMGEQAIESLGPSSGERLNSTGAESHDIVSGLPSIGSLEY 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00048 844 Gene3D - 714 807 - -
Gabi629g00048 844 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Gabi629g00048 844 SUPERFAMILY CAD & PB1 domains 717 792 - -
Gabi629g00048 844 MobiDBLite consensus disorder prediction 816 831 - -
Gabi629g00048 844 FunFam Auxin response factor 292 364 - -
Gabi629g00048 844 Gene3D - 292 364 - -
Gabi629g00048 844 SMART B3_2 128 230 IPR003340 GO:0003677
Gabi629g00048 844 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Gabi629g00048 844 CDD B3_DNA 127 228 IPR003340 GO:0003677
Gabi629g00048 844 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Gabi629g00048 844 ProSiteProfiles PB1 domain profile. 718 802 IPR000270 GO:0005515
Gabi629g00048 844 MobiDBLite consensus disorder prediction 469 488 - -
Gabi629g00048 844 Gene3D - 126 229 IPR015300 -
Gabi629g00048 844 FunFam Auxin response factor 713 807 - -
Gabi629g00048 844 Pfam AUX/IAA family 711 803 IPR033389 -
Gabi629g00048 844 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi629g00048 844 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 807 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi629g00048 844 FunFam Auxin response factor 126 230 - -
Gabi629g00048 844 MobiDBLite consensus disorder prediction 814 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00048 Gabi-Chr629 420582 431665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00048 98 815 B3 DNA Binding Superfamily AT5G37020 69.093 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi629g00048 AUX_IAA 1.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00048 - - gmx:100784804 1561.97