Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00047 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGGGAGAAGAAATGTTTGAATTCTGAGCTATGGCATGCATGCGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGGCACATACCCAATTACCCGAGCTTGCCACCCCAGTTGATTTGCCAACTTCACAACGTTACAATGCATGCAGATGTTGAAACAGATGAAGTTTATGCTCAAATGACACTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACGTTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACATTAACTGCAAGTGACACCAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAAAAAGTTTTCCCTCCACTGGATTTTTCGCAGCAGCCACCTGCCCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACAACGGGGTGGAGTGTATTTGTTAGTGCCAAAAGACTCGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAAAAGAATCAGCTACTTTTGGGAATACGTCGTGCCAATCGACCACAAACTGTTTTGCCATCATCAGTTCTATCCAGTGATAGTATGCACATTGGCCTTCTTGCAGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACTGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATATGTGACCTGGATCCTGTTCGTTGGCCGAATTCTCATTGGCGATCTGTTAAGGTTGGTTGGGATGAATCAACAGCCGGAGAGAGACAGCCACGGGTATCTTTATGGGAAATTGAACCTTTAACAACATTTCCAATGTATCCATCACTATTTCCCCTCAGATTGAAACGCCCATGGCATCCTGGCACCTCATCTTTTCATGATGGCAGAGATGAAGCAACTAATGGGCTAATGTGGCTGAGAGGTGGACCTGGAGACCAAGGACTCAATTCCCTGAATTTTCAAGGTGCTGGTTTGTTGCCCTGGATGCAGCAGAGACTGGATCCAACTTTGCTTGGAAATGATCATAATCAGCAGCAGTACCAAGCCATGTTGGCTGCTGGTTTGCAGAACCTAGGGAGTGGAGATCTCTTGAGGCAACAAATGATGAATTTTCAACAGCCTTTCAATTATCTTCAACAATCAGGAAACCCCAATCCTCCTCTGCAACTTCAGCAGCAGCAAGCAATCCAGCAATCCGTATCTTCTAATATCCTGCAGCCACAAGCCCAAGTATTGGCAGAGAACCTGTCTCAGCACCTCCTTCATAAATCACACAACAATCGAGAAGACCAAACACAACAGCAGCAGCACACTTATCAAGATACGCTTTTAATTCAAAATGATCAGCTCCATCAGAGGCAACACTCTAGCTTGCCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCTTAAAGTTCTCTGCTTCAGTTTCGCCAGGGCAAAACATGCTTGGTTCACTTTGTCCAGAGGGGAGTGGCAATCTCTTGAATTTATCCAGAAGTGGTCAGTCCATGCTGACTGAACAGTTACCCCAACCATCATGGGCCCCAAAGTATTCATCTTTGCAGGTCAATGCCTTTGGCAACTCAATGTCAAATGTGCAATATTCCGGAAAAGATACTGCAATGGTTCCACCACATTGTAACTCAGATAACCAAAATCCTACTATATTCGGTGTCAATATCGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATGCTACTGCATCAGCCGATACTGATGCATCAACGATGTCATTAGGGGAGTCTGGATTCCAGGGTCCTCTATATGCTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCAAGATGACCCCCAAAACCAGACACGAACATATGTCAAGGTTTACAAAGCAGGTTCAGTAGGGCGCTCACTTGACATCTCCCGGTTCAGCAGCTATCATGAACTGCGAGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGTAAATTTGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTCAATAATGTTTGGTATATCAAAATACTTTCACCAGAAGAAATGCAGAAAATGGGAGAACAAGCCATAGAATCCCTTGGTCCAAGTTCAGGAGAAAGGCTGAACAGCACTGGTGCAGAATCTCATGACATTGTTTCTGGACTACCATCAATAGGCTCACTTGAATACTGA 2532 0.4534 MKLSTSGLGQQGHEGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVLPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLMWLRGGPGDQGLNSLNFQGAGLLPWMQQRLDPTLLGNDHNQQQYQAMLAAGLQNLGSGDLLRQQMMNFQQPFNYLQQSGNPNPPLQLQQQQAIQQSVSSNILQPQAQVLAENLSQHLLHKSHNNREDQTQQQQHTYQDTLLIQNDQLHQRQHSSLPSPSYSKPDFLDSSLKFSASVSPGQNMLGSLCPEGSGNLLNLSRSGQSMLTEQLPQPSWAPKYSSLQVNAFGNSMSNVQYSGKDTAMVPPHCNSDNQNPTIFGVNIDSSGLLLPTTVPRYATASADTDASTMSLGESGFQGPLYACMQDSSELLQSAGQDDPQNQTRTYVKVYKAGSVGRSLDISRFSSYHELREELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEEMQKMGEQAIESLGPSSGERLNSTGAESHDIVSGLPSIGSLEY 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00047 843 MobiDBLite consensus disorder prediction 815 830 - -
Gabi629g00047 843 FunFam Auxin response factor 291 363 - -
Gabi629g00047 843 Pfam AUX/IAA family 710 802 IPR033389 -
Gabi629g00047 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 806 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi629g00047 843 FunFam Auxin response factor 125 229 - -
Gabi629g00047 843 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Gabi629g00047 843 Gene3D - 291 363 - -
Gabi629g00047 843 SUPERFAMILY CAD & PB1 domains 716 791 - -
Gabi629g00047 843 Gene3D - 713 806 - -
Gabi629g00047 843 FunFam Auxin response factor 712 806 - -
Gabi629g00047 843 MobiDBLite consensus disorder prediction 468 487 - -
Gabi629g00047 843 SMART B3_2 127 229 IPR003340 GO:0003677
Gabi629g00047 843 MobiDBLite consensus disorder prediction 813 843 - -
Gabi629g00047 843 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Gabi629g00047 843 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Gabi629g00047 843 ProSiteProfiles PB1 domain profile. 717 801 IPR000270 GO:0005515
Gabi629g00047 843 CDD B3_DNA 126 227 IPR003340 GO:0003677
Gabi629g00047 843 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi629g00047 843 Gene3D - 125 228 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00047 Gabi-Chr629 420582 431665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00047 97 814 B3 DNA Binding Superfamily AT5G37020 69.093 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi629g00047 AUX_IAA 1.2e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00047 - - gmx:100784804 1555.04