Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00035 ATGGAGCAGGAACAACGAAGCCTTGAAAGCTTCTTAACATGGGCAGCACAGCTTGGAATATCAGACTCAACAAGCACCAATCAACCTCAACACTCTCTCTCCTCTTTGGGTTCTTCTCTCTGTGTCTCTCATTTTCCTCACTCTGGCGGTAGAGGTTTGGGTGCGGTGAGAGACCTTAGGAGGGGAGAAATTATTCTCAGAGTTCCAAAATCTGCTTTAATGACAAGCGAGAGTGTTATGGAAGATGATGAAAAACTCTGCGTTGCTGTCAATAAGCACTCTTCTGTTTCCTCAGCTCAGATATTGATTGTTTGCTTGTTGTATGAAATGGGTAAAGGAAAGGCTTCAAGGTGGCATCCTTACCTCGTGCATTTGCCTCACAGTTATGACCTACTAGCCATGTTTGGTGAATTTGAGAAACATGCTCTGCAAGTGGATGAGGCTATGTGGGTCACAGAAAAAGCTGTACTAAAAGCCAAATCAGAGTGGAAAGAAGCTCATACTTTGATGGAAGATCTCAAGTTTAAGCCCCAGTTTTTAACACTTAAGGCTTGGGTTTGGGCTGCTGCAACGATATCATCCCGGACGTTACATATACCATGGGATGAAGCTGGGTGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAGAGGAGCCATCTGATATTGAGGATGTAGACTATTTGCTATCCCGTTCTTCCATTCATGTTACTGCCGTATCAAATGGAGACAAGAATATAATGATAGATGCAGAGCAACTTGATTCTCATTCTCGGAGATTAACAGATGGTGGGTTTGAGGAAGATGCTAATGCATATTGCTTTTATGCTAGGGCACATTACAAGAAAGGAGATCAGGTTCTATTGTGCTATGGAACTTACACAAATTTGGAGCTTCTTGAACACTATGGGTTTCTCTTACAAGAAAACCCAAACGACAAAAATTTTATCCCTTTGGAACCTGCTGTATATTCTTCCACTTCTTGGTCTAAGGAATCACTCTATATCCATCATAATGGGAAGCCTTCCTTTGCACTACTAGCTGCATTGAGGCTATGGGCAACCCCTCGAAATAAGAGGAGGTCTATTGGACATCTTGCATATTCTGGTTCTCAACTGTCTGCAGACAATGAAATTTTCATTATGAAATGGCTATCAAAAACTTGTGATGCTGTCTTAAAAAATCTGCCATCATCTATTGACGAAGACACCTTGCTCCTAAATGCAATGGATGATAGTCAAGATTTCTTCACTTTCATGGATATCACAAAACTCATGTCTTCCAGTTCAAGGGCTGAGATTTATACTTTCTTAGAAGCTTATAATATAAAGGATGCACATAGTTTTGCTGATATTCTTCTATCTAGAAAAGCTAGAAGATCCATGGACAGGTGGAAATTAGCTGTCCAATGGAGGCTCAGGTATAAAAAAGTCCTTGTCGATTGTATCTGTTTTTGCAATGAAATACTGGATTCTTTCATGAAATAA 1497 0.4068 MEQEQRSLESFLTWAAQLGISDSTSTNQPQHSLSSLGSSLCVSHFPHSGGRGLGAVRDLRRGEIILRVPKSALMTSESVMEDDEKLCVAVNKHSSVSSAQILIVCLLYEMGKGKASRWHPYLVHLPHSYDLLAMFGEFEKHALQVDEAMWVTEKAVLKAKSEWKEAHTLMEDLKFKPQFLTLKAWVWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEEPSDIEDVDYLLSRSSIHVTAVSNGDKNIMIDAEQLDSHSRRLTDGGFEEDANAYCFYARAHYKKGDQVLLCYGTYTNLELLEHYGFLLQENPNDKNFIPLEPAVYSSTSWSKESLYIHHNGKPSFALLAALRLWATPRNKRRSIGHLAYSGSQLSADNEIFIMKWLSKTCDAVLKNLPSSIDEDTLLLNAMDDSQDFFTFMDITKLMSSSSRAEIYTFLEAYNIKDAHSFADILLSRKARRSMDRWKLAVQWRLRYKKVLVDCICFCNEILDSFMK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00035 498 Coils Coil 496 498 - -
Gabi629g00035 498 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 305 416 IPR036464 -
Gabi629g00035 498 ProSiteProfiles SET domain profile. 38 295 IPR001214 GO:0005515
Gabi629g00035 498 Pfam Rubisco LSMT substrate-binding 343 482 IPR015353 -
Gabi629g00035 498 SUPERFAMILY SET domain 7 313 IPR046341 -
Gabi629g00035 498 FunFam Protein SET DOMAIN GROUP 40 8 309 - -
Gabi629g00035 498 CDD SET_LSMT 49 309 - -
Gabi629g00035 498 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 428 - -
Gabi629g00035 498 Gene3D set domain protein methyltransferase, domain 1 4 309 - -
Gabi629g00035 498 Gene3D - 322 497 IPR036464 -
Gabi629g00035 498 Pfam SET domain 50 295 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi629g00035 SET 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00035 - - gmx:100787452 856.67