Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00029 ATGTCACTTACTGTGTTAATAGTAAGCATTCTCTTCACACTCTTTTCAACAGTCACCTCTCACTACTCCTCCTATACTTCTCAACCTCCATCTTCTTCTTCTTCGTCCTCCCTCTTCGAATGGCGATCTGCGCACGCCACTTACTACGCGGCGGCGGATCCCCGTGACTCGGTGGGAGGCGCGTGCGGCTACGGCGACCTGTTGAAGGCGGGTTACGGGATGGCGACGGTGGGTCTGAGTGAGGCGCTGTTCGAGCGGGGCCAGATCTGCGGCGCGTGCTTCGAGCTGCGGTGCGTGGAGGACAACCGGTGGTGCATACCCGGCACGTCCATCATAGTGACCGCCACCAACTTCTGCGCTCCCAACTACGGGTTCACTTCGGAGGGAGGTGGACACTGTAACCCTCCGAACAAGCACTTCGTTCTCCCAATCGATGCCTTCGAGAAGATCGCAATCTGGAAGGCTGGTAACATGCCCGTCCAGTATCGCAGGATAAAGTGCAGAAAGGAAGGAGGAATCCGATTTACAATCACTGGTTCTGGTATCTTCATTTCGGTGCTGATCACCAATGTTGCTGGCCACGGAGACATAGCAGGGGTGAAGGTTAAGGGCTCAAGAACTGGTTGGCTTTCAATGGGTCGGAATTGGGGCCAAAACTGGCATGTAAATGCGTTACTACAGAATCAACCTCTTTCATTCGAGGTTACTGGTAGTGATGGCAAAACAGTTACATCTTACAATGTTGCTCCTAAGGATTGGAGCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGACTTAA 801 0.5243 MSLTVLIVSILFTLFSTVTSHYSSYTSQPPSSSSSSSLFEWRSAHATYYAAADPRDSVGGACGYGDLLKAGYGMATVGLSEALFERGQICGACFELRCVEDNRWCIPGTSIIVTATNFCAPNYGFTSEGGGHCNPPNKHFVLPIDAFEKIAIWKAGNMPVQYRRIKCRKEGGIRFTITGSGIFISVLITNVAGHGDIAGVKVKGSRTGWLSMGRNWGQNWHVNALLQNQPLSFEVTGSDGKTVTSYNVAPKDWSFGQTFEGKQFET 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00029 266 Pfam Lytic transglycolase 77 162 IPR009009 -
Gabi629g00029 266 PRINTS Expansin signature 183 204 IPR002963 GO:0009664
Gabi629g00029 266 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Gabi629g00029 266 PRINTS Expansin signature 218 239 IPR002963 GO:0009664
Gabi629g00029 266 PRINTS Expansin signature 98 109 IPR002963 GO:0009664
Gabi629g00029 266 PRINTS Expansin signature 147 160 IPR002963 GO:0009664
Gabi629g00029 266 PRINTS Expansin signature 130 147 IPR002963 GO:0009664
Gabi629g00029 266 PRINTS Expansin signature 71 85 IPR002963 GO:0009664
Gabi629g00029 266 PRINTS Expansin signature 111 121 IPR002963 GO:0009664
Gabi629g00029 266 PRINTS Expansin signature 171 183 IPR002963 GO:0009664
Gabi629g00029 266 SMART dpbb_1 76 162 IPR007112 -
Gabi629g00029 266 Gene3D - 25 168 IPR036908 -
Gabi629g00029 266 SUPERFAMILY PHL pollen allergen 169 261 IPR036749 -
Gabi629g00029 266 Gene3D - 172 264 IPR036749 -
Gabi629g00029 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 172 IPR007112 -
Gabi629g00029 266 CDD DPBB_EXPA_N 40 167 - -
Gabi629g00029 266 FunFam Expansin 172 264 - -
Gabi629g00029 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 261 IPR007117 -
Gabi629g00029 266 PANTHER EXPANSIN-A15 12 264 IPR002963 GO:0009664
Gabi629g00029 266 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576
Gabi629g00029 266 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Gabi629g00029 266 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Gabi629g00029 266 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Gabi629g00029 266 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Gabi629g00029 266 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Gabi629g00029 266 Pfam Expansin C-terminal domain 173 250 IPR007117 -
Gabi629g00029 266 SUPERFAMILY Barwin-like endoglucanases 40 190 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00029 Gabi-Chr629 258415 260456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00029 21 266 Expansin Gene Family AT3G03220 82.520 7.28e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00029 - - gmx:100784516 459.914