Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00028 ATGGCGATTCATGCTCAAAATGGAGTTACTAGATCACAAGGCAGTCTTCAAGTTGGGAATGGAGTAACTTTGAATTCTGGAGTGCATTCTGTTGCACGTATTCAACTAAGTGATCAATTTTCTTGCGGAAATGACTATTCCCTTAAGGTAAGGAAACCGTATACTATCACCAAGCAGAGAGACAGATGGACTGATGAAGAACATCACAAGTTCCTTGAAGCTTTGAAGCTGCATGGCCGGGCCTGGCGACGAATTGAAGAACATGTTGGCACGAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGAGACTCTAGTGGGAACAGTACAACCTTGGCCGAATCAGTTGAAATTCCTCCTCCACGACCAAAACGAAAGCCAATTCATCCTTATCCACGTAAACTAGTGGAGACCCGGAATACCGAAATTTCCAACTTAGAACAGCAATTGAGGTCTAAATCTCCCAAGTCATCAGATTTTGGTCAAGAAAACAATTCTCCCAAATCAGTGTTTTCAGACACCCTTGGTTCCTCTGATTCAGATACACCAACAGGAAGTTTGTCCCCGGTCTCATCCATTAGTGGTGTCCATACCAGTAGCTTTCCACTTGCTGAGCCCAAAACATCATTTGAGGAAGATGGATCTCCACCACCGGATGCTCTATATTCTGGTTCAACTCATGATGAGCAACCATTCATGAAACTCGAACTTTTCCGCAAAGAAGATGTTTCTACCAAAGACGATGCAGCGGAAGAATCATCTGGTCGTACTCTCAAATTGTTTGGAACAACTCTGCTGGTAACCGATACCTGTAGACCATCTTCTCCAACAACGGAGGAGGCATGCAAACCAATACCTGCCATTTACCATATGCAACTTCAGAGTGGAAGTTCAGATATTGCAGAAGGTCCTGCAACTTTTGTTCCTTGGTGGTCTCGTTCCCACAATACTCCATTCATGCCACTGCACAAGGAGCCTGAGGGGAAACATCAATGTCATATTCTTGGGGATTTTGAGGATAAAGAAATTCAAAAAGAAGGATCTTGGACTGGTTCAAACACTAGTTCGGTTAATGATGGAGAGAACAATGAAAAATCAGATGATCAAGCCAAAAGTCATGCGCATTGCTTTAAATATAGAGGGGGTGGACAGTTTTACCTTCTTGGCCACACCACACCAAGTGAAACATCAAGAATATCTGAGCTAAGGGTGAGACATAAAACCTGTGGGAAGGGGTTTGTACCATATAAAAGGTGCATTGCAGAAAGAGAAAACCAGTACTCACGAGTAACAGATGGGGAAAGGGAAGAGCAACGTATCAGGCTTTCCTTATAG 1356 0.4329 MAIHAQNGVTRSQGSLQVGNGVTLNSGVHSVARIQLSDQFSCGNDYSLKVRKPYTITKQRDRWTDEEHHKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDSSGNSTTLAESVEIPPPRPKRKPIHPYPRKLVETRNTEISNLEQQLRSKSPKSSDFGQENNSPKSVFSDTLGSSDSDTPTGSLSPVSSISGVHTSSFPLAEPKTSFEEDGSPPPDALYSGSTHDEQPFMKLELFRKEDVSTKDDAAEESSGRTLKLFGTTLLVTDTCRPSSPTTEEACKPIPAIYHMQLQSGSSDIAEGPATFVPWWSRSHNTPFMPLHKEPEGKHQCHILGDFEDKEIQKEGSWTGSNTSSVNDGENNEKSDDQAKSHAHCFKYRGGGQFYLLGHTTPSETSRISELRVRHKTCGKGFVPYKRCIAERENQYSRVTDGEREEQRIRLSL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00028 451 MobiDBLite consensus disorder prediction 115 233 - -
Gabi629g00028 451 MobiDBLite consensus disorder prediction 352 379 - -
Gabi629g00028 451 Gene3D - 62 108 - -
Gabi629g00028 451 MobiDBLite consensus disorder prediction 126 143 - -
Gabi629g00028 451 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Gabi629g00028 451 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Gabi629g00028 451 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Gabi629g00028 451 PANTHER SWI/SNF COMPLEX-RELATED 43 361 - -
Gabi629g00028 451 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Gabi629g00028 451 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Gabi629g00028 451 MobiDBLite consensus disorder prediction 145 212 - -
Gabi629g00028 451 CDD SANT 62 105 IPR001005 -
Gabi629g00028 451 SMART sant 59 107 IPR001005 -
Gabi629g00028 451 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Gabi629g00028 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00028 Gabi-Chr629 249169 252406 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi629g00028 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00028 - - gmx:778060 624.78