Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00016 ATGGTTCTATCCAAAACCGCCTCCCAAACGGATGTTTCCGTACACTCAACCTTCGCCTCCCGCTATGTCCGCACCTCTCTTCCCAGATTCAAAATGGCGGAGGAGTCGATTCCAAAGGAAGCTGCGTACCAGATCATAAACGACGAGTTAATGCTGGATGGAAACCCAAGGCTGAACCTGGCTTCTTTTGTGACGACGTGGATGGAGCCTGAATGTGACAAGCTCATCATGGCTTCCATCAACAAGAACTACGTCGACATGGACGAGTACCCTGTCACCACTGAGCTCCAGAATCGGTGTGTTAACATGATAGCTCATCTTTTCAATGCACCACTTGAAGAGGCAGAACCTGCAGTTGGTGTTGGCACGGTTGGCTCATCAGAGGCCATAATGTTGGCCGGATTGGCATTCAAAAGGAAGTGGCAGAACAGAAGGAAAAGTGAAGGGAAGCCTTATGACAATCCAAACATTGTTACTGGTGCTAATGTTCAGGTTTGCTGGGAGAAATTTGCACGGTACTTTGAGGTGGAGTTGAAGGAGGTCAAGCTGCGTGATGGATACTATGTAATGGACCCTGAAAAAGCTGTGGAAATGGTGGATGAAAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAATGGAGAGTTCGAAGATGTCAAGCGCTTGAACGATCTCCTAGTCGAAAAGAATAACGAAACTGGATGGGACACTCCAATTCATGTGGATGCAGCCAGTGGTGGATTCATTGCACCATTTCTTTATCCAGAGCTTGAGTGGGACTTCCGGTTACCACTAGTGAAGAGCATCAACGTTAGTGGACACAAATATGGTCTAGTCTATGCAGGAATTGGTTGGGTCATCTGGAGAAGCAAGGAAGACCTTCCTGACGAACTCATCTTCCACATTAACTATCTCGGAGCAGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGCTCCAGCCAAGTTATTGCTCAGTACTACCAATTAATTCGTTTGGGTTATGAGGGATATAAAAATGTGATGGAAAACTGCACAGACAACATGATGGTACTTAAGGAGGGACTGGAGAAAACAGGTAGGTTTGAGATTGTATCGAAGGACGATGGTGTACCATTGGTGGCCTTCACATTGAAGGATCACAGCCACTTCGATGAATTCCAAATCTCTGATATGCTGAGGCGTTATGGTTGGATAGTGCCAGCATACACCATGCCACCAGATGCACAACATGTCACCGTTCTACGTGTTGTCATTAGAGAAGACTTTTCACGTACCCTTGCGGAGCGTCTTGTTATTGATGTCTCCAAAGTGTTGCACGACCTCGATTTGCTTCCTGCTAAGGTACTCATCATGATTGTTAAGAAGAGTGATCTTGAGACCCAAAGGGAAATCACTTCAATTTGGAAGAAATTTGTCATGGACAGGAAGAAGATGAACGGTGTTTGTTAG 1458 0.4595 MVLSKTASQTDVSVHSTFASRYVRTSLPRFKMAEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAEPAVGVGTVGSSEAIMLAGLAFKRKWQNRRKSEGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNNETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCTDNMMVLKEGLEKTGRFEIVSKDDGVPLVAFTLKDHSHFDEFQISDMLRRYGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVIDVSKVLHDLDLLPAKVLIMIVKKSDLETQREITSIWKKFVMDRKKMNGVC 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00016 485 FunFam Glutamate decarboxylase 1 65 - -
Gabi629g00016 485 FunFam Glutamate decarboxylase 66 360 - -
Gabi629g00016 485 Gene3D - 66 360 IPR015421 GO:0003824
Gabi629g00016 485 FunFam Glutamate decarboxylase 361 448 - -
Gabi629g00016 485 CDD DOPA_deC_like 59 439 - -
Gabi629g00016 485 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Gabi629g00016 485 SUPERFAMILY PLP-dependent transferases 15 443 IPR015424 -
Gabi629g00016 485 Gene3D - 1 65 - -
Gabi629g00016 485 PANTHER GLUTAMATE DECARBOXYLASE 1 485 IPR010107 GO:0004351|GO:0006536|GO:0030170
Gabi629g00016 485 Pfam Pyridoxal-dependent decarboxylase conserved domain 38 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Gabi629g00016 485 Gene3D - 361 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00016 Gabi-Chr629 159844 164247 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00016 1 485 Calmodulin-binding Proteins AT5G17330 84.462 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00016 K01580 - gmx:100787167 920.998