Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi629g00003 ATGGTTTTGTCATGGACAAAAGGGAGAGTTTTCCGCCGTGGCCGAAAAGGGATTAAAGAATTGAATTCCGGTGGTGATTTGGAGGTGGAGGTTGCGATGCCCACCCATTTCCGGTGCCCGGTCACTCTGGACTTGATGAAAGACCCGGTGACACTGTCCACGGGTATAACCTACGACAGAGACAGCATCGAGAAGTGGTTCGAGGCAGGGAACCACACGTGCCCGGTTACCAAGAGGGACCTCGCCAGCTTCGACATGATCCCAAACCATGCCCTTCGTAGGATGATTCAGGATTGGTGCGTCGAGCACCGTTCATTCGGGGTCGAAAGGATCCCCACTCCTCGGATACCCGTCACTCCGTACGAGGTTTCTGACACGTGCACGAGGATCATGTTGGCTTCTCAAAACGGGGACGAAAACAGGTGCCGTGAATTGGTGCATAAGATAAAGGCTTGGGGGAAAGAGAGTGAGAGGAACAAGAGGTGCATAGTTGCCAACGGTGCTCCACTTGTTCTGGCCAGTGCCTTTGATTCTTTCTCACGTGGCTCGGTTGAGAAAAACGTGGTCGTTTTGGAGGAGATCTTAGGGGTGTTGACATGGATGCGCCCTATTGGGGAAGAGGGTAGATCCATGTTGGGGTCAGCACCTTCTATGAGTTGCATGGTTTGGTTCCTAAATGGTAAACAAATCTCCGCAAGGCAAAATGCTGCTTTGTTGCTCAAGGAAATGCCTATTGAGGCATTGGCAAAAACTGAAGGGGTTGTTGAAGGTTTGGTTAACATGATTAGGGAGCCTATTGGACCTTCTGTTACCAAGTCATGCTTGTTAATGATTTTTCACTTGGTTTCCTCATCAGAGAATAAAGACTTAATCTCACAAAGATTTGTGGAATTGGGTTTGGCTTCGCTCGTGCTTGAGGCTATTGTTGATGCTGAAAGAGGGATCTGCGAGAAAGGTTTGGGGGTGTTGGATTGCATTTGTGAGCGAAAACAAGGGATGGAAATAGCAAAGTCAAATGCTCTGATTTTGCCTCTTGTTATTAAGAAGCTTTTGAGGGTGTCCGAGTTGAGTTCTACTTTTGCAGTCTCTATTCTTTGGAAGCTATGTGACAAGACCGACGAAAGGATCTTGATTGAGGCACTTCAAGTGGGTGCCTTTCAGAAACTTCTTGTTCTGTTGCAGGTGGGTTGTGGTGAGGACACAAAGGAGAAGGCTACCGAGTTGTTGAGGTTGTTGAATGGTTACAGGAGCAAAGCAGATTGTGTTGATTCCTCATTGGATTTCAAGCACCTTAAGAAGCCCTTCTGA 1308 0.4794 MVLSWTKGRVFRRGRKGIKELNSGGDLEVEVAMPTHFRCPVTLDLMKDPVTLSTGITYDRDSIEKWFEAGNHTCPVTKRDLASFDMIPNHALRRMIQDWCVEHRSFGVERIPTPRIPVTPYEVSDTCTRIMLASQNGDENRCRELVHKIKAWGKESERNKRCIVANGAPLVLASAFDSFSRGSVEKNVVVLEEILGVLTWMRPIGEEGRSMLGSAPSMSCMVWFLNGKQISARQNAALLLKEMPIEALAKTEGVVEGLVNMIREPIGPSVTKSCLLMIFHLVSSSENKDLISQRFVELGLASLVLEAIVDAERGICEKGLGVLDCICERKQGMEIAKSNALILPLVIKKLLRVSELSSTFAVSILWKLCDKTDERILIEALQVGAFQKLLVLLQVGCGEDTKEKATELLRLLNGYRSKADCVDSSLDFKHLKKPF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi629g00003 435 CDD RING-Ubox_PUB 34 86 IPR045210 -
Gabi629g00003 435 Gene3D - 124 411 IPR011989 -
Gabi629g00003 435 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Gabi629g00003 435 SUPERFAMILY RING/U-box 28 107 - -
Gabi629g00003 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 106 IPR013083 -
Gabi629g00003 435 SUPERFAMILY ARM repeat 137 412 IPR016024 -
Gabi629g00003 435 Pfam U-box domain 34 104 IPR003613 GO:0004842|GO:0016567
Gabi629g00003 435 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Gabi629g00003 435 PANTHER WDSAM1 PROTEIN 30 422 IPR045185 GO:0061630
Gabi629g00003 435 FunFam RING-type E3 ubiquitin transferase 33 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi629g00003 Gabi-Chr629 17510 18953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi629g00003 28 435 U-box Gene Family AT5G37490 47.229 1.79e-127 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi629g00003 - - gmx:100795913 668.692