Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi628g00003 ATGACTGGTTTTGACACAAATCACGATGACCCATCAAAGGTTTCACCTCTCGCAACCGATGGTGATATACCTCATGATGCTGGAAATGATGTGAAGTTGAGTTCTAGGGACCAAAGAGAGGCTTTGGCATGTGAACCTAAGTGTATTATATGTGGCCGCTACGGTGAGTATATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAATGCAAACAATCACTGCTATGCAGAATTGCCAAATCTACCTCACCTGTTGGAGGCCTTCCACCACCCAGAAAGCTACCTGCAGCGGATGAGTGCTTTTATGTTAGGGATACTGGTTGCGTATCAGGAACTCCGTCATTAGCTAGTGATCAGGCTGAATCGCTTAGAAAGAAACTCGACATTCATGTGAAAGGTGATGTGGTGGCACCTGTATTGTCATTCAGTTCCTGTAACCTCCCTGACAAGCTCCTCCACAATATAGAAGCAGCTGGATATGACTTGCCTACACCTGTCCAGATGCAAGCAATCCCTGCTGCTTTGACGGGCAAAAGCATGCTTGTTTTGGCTGAAACAGGATCTGGAAAGTCTGCTTCATTTCTTATTCCGATAGTTTCTCGTTGTGTGAGTCATCGTCTGGCATTTGTTTCAGATAAGAAGAACCCTTTAGCTATAGTGTTAACACCTACCAGAGAGCTCTCTATACAGGTTGAAGAGCATGCTAAATTGCTTGGAAAGGGATTGCCTTTTAAAACTGCACTTGTGGTTGGCGGTGAGGCCATGGCTGGGCAACTCTACCGTATTCAACAAGGAGTGGAATTGATTGTGGGAACCCCAGGAAGGCTTGTTGATCTTTTAATTAAGCATGAGATTGACTTAGATGATGTGATGACTTTTGTTCTGGATGAGGTGGACTGCATGCTACAAAGGGGTTTTCGAGATCAGGTCTTGCAGATATATAGGGCTCTGTCACAACCTCAGGTCTTGATGTTTTCTGCAACAATGTCTAATGATTTAGAGAAGATGGCAAACTCTCTGGCGAAAGCTACAGTTGTTATCTCTGTTGGGGAACCTAATAGACCAAATAAGGCTGTGAAGCAGCTAGCAATATGGGTTGAGTCAAAGCAAAAGAAGCAGAAGCTGTTTGACATTTTGGGGAGTGAGAAGCATTTTATGCCACCTGTGTTAATATATGTCGGCTCCAGACTTGGGGCAGATCTCCTGGCTAATGCAATCACTGTTGCCACAGGAATTAAAGCAGTTTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGGGAAATAATGCAGTCCTTTTTGGTGGGTGAGGTCCCAGTGGTTGTGGCTACTGGAGTTTTGGGTAGGGGGGTTGATCTATTGGGGGTAAGACAGGTAATTGTATTTGACATGCCCAATTCCATTAACGAGTATGTACATCAGATTGGAAGAGCATCTAGAATGGGAGAGGAAGGTCAAGCCATGGTTTTTATAAATGAGGAGAATAAGAATGTATTTGCAGAATTAGTTGATGTTCTAAAATCTGGTGGAGCAGCTGTGCCTCGGGAGCTTGTTAATTCACGTTATACCGCGGGATTTTTCTCTGGTGTTAAGGGTTCAAAGAAGAGAAAGCATAGATGA 1623 0.4387 MTGFDTNHDDPSKVSPLATDGDIPHDAGNDVKLSSRDQREALACEPKCIICGRYGEYICDETDDDVCSLECKQSLLCRIAKSTSPVGGLPPPRKLPAADECFYVRDTGCVSGTPSLASDQAESLRKKLDIHVKGDVVAPVLSFSSCNLPDKLLHNIEAAGYDLPTPVQMQAIPAALTGKSMLVLAETGSGKSASFLIPIVSRCVSHRLAFVSDKKNPLAIVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGEAMAGQLYRIQQGVELIVGTPGRLVDLLIKHEIDLDDVMTFVLDEVDCMLQRGFRDQVLQIYRALSQPQVLMFSATMSNDLEKMANSLAKATVVISVGEPNRPNKAVKQLAIWVESKQKKQKLFDILGSEKHFMPPVLIYVGSRLGADLLANAITVATGIKAVSIHGEKSMKERREIMQSFLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSINEYVHQIGRASRMGEEGQAMVFINEENKNVFAELVDVLKSGGAAVPRELVNSRYTAGFFSGVKGSKKRKHR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi628g00003 540 SMART helicmild6 401 483 IPR001650 -
Gabi628g00003 540 SMART ultradead3 160 363 IPR014001 -
Gabi628g00003 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 497 IPR027417 -
Gabi628g00003 540 Pfam HIT zinc finger 46 72 IPR007529 -
Gabi628g00003 540 CDD SF2_C_DEAD 360 492 - -
Gabi628g00003 540 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 348 IPR014001 -
Gabi628g00003 540 Pfam DEAD/DEAH box helicase 165 336 IPR011545 GO:0003676|GO:0005524
Gabi628g00003 540 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 136 519 - -
Gabi628g00003 540 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Gabi628g00003 540 MobiDBLite consensus disorder prediction 1 31 - -
Gabi628g00003 540 Gene3D - 28 84 - -
Gabi628g00003 540 Pfam Helicase conserved C-terminal domain 374 483 IPR001650 -
Gabi628g00003 540 Gene3D - 349 523 IPR027417 -
Gabi628g00003 540 Gene3D - 112 348 IPR027417 -
Gabi628g00003 540 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 522 IPR001650 -
Gabi628g00003 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 350 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi628g00003 Gabi-Chr628 102637 111914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi628g00003 142 503 Eukaryotic Initiation Factors Gene Family AT1G72730 32.418 1.08e-51 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi628g00003 K19466 - gmx:100781473 870.922