Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi627g00007 ATGCTACCAGGAGATATCCATGGTCAATATTCTGATCTTTTGAGACTTTTTGAGCATGGTGGATTGCCTCCTCGCTCCAATTACTTATTTTTAGGGGATTATGTGGATCGTGGAAAGCAAAGTCTTGAGACAATATGTCTTCTTCTTGCCTATAAAATAAAATACCCAGGAAACTTTTTCCTTCTTAGGGGAAACCATGAATCTGCTTCTATAAACCGTGTCTATGGATTTTATGATGAATGTAAAAGGAGATTCAATGTCAAGCTTTGGAAAATATTTGCAGATTGTTTCAACTGTTTGCCTGTGGCAGCTCTCATTGATGAAAAGATATTATGTATGCATGGTGGACTCTCTCCTGAATTGCACAATCTAAATCAGATAACTAGTTTGCCACGTCCAATGGAAGTACCTGAAACTGGTCTATTATGTGACCTACTATGGTCTGATCCTAGTAAACACACTCAGGGTTGGGGAACCAATGAACGTGGAGTTTCATATACTTTTAGTGCTGGCATGGTGACAAAATTTCTTGAAAAACATGACCTTGACTTGATTTGTAGAGCACACCAGGTTGTTGAAGATGGATATGAATTTTTTGCTAATAGACAACTTGTGACTATCTTTTCTGCGCCTAATTACTGTGGAGAGTTTGACAATGCTGGAGCAATGATGACTGTGGATGAGAGTCTTACGTGCTCTTTTCAAATATTAAAGCCTGTGGATAAAAGGCCCAAGTTTGGTTTTCGGAGCACAACTTCATTTAAGGTTAGTAGTCCAACAAAAGTCTTGGTGTTTTAG 798 0.3847 MLPGDIHGQYSDLLRLFEHGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPGNFFLLRGNHESASINRVYGFYDECKRRFNVKLWKIFADCFNCLPVAALIDEKILCMHGGLSPELHNLNQITSLPRPMEVPETGLLCDLLWSDPSKHTQGWGTNERGVSYTFSAGMVTKFLEKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMTVDESLTCSFQILKPVDKRPKFGFRSTTSFKVSSPTKVLVF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi627g00007 265 SMART pp2a_7 1 241 IPR006186 GO:0016787
Gabi627g00007 265 SUPERFAMILY Metallo-dependent phosphatases 4 243 IPR029052 -
Gabi627g00007 265 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 3 243 - -
Gabi627g00007 265 Pfam Calcineurin-like phosphoesterase 4 191 IPR004843 GO:0016787
Gabi627g00007 265 ProSitePatterns Serine/threonine specific protein phosphatases signature. 62 67 IPR006186 GO:0016787
Gabi627g00007 265 FunFam Serine/threonine-protein phosphatase 1 250 - -
Gabi627g00007 265 PRINTS Serine/threonine phosphatase family signature 203 219 IPR006186 GO:0016787
Gabi627g00007 265 PRINTS Serine/threonine phosphatase family signature 95 121 IPR006186 GO:0016787
Gabi627g00007 265 PRINTS Serine/threonine phosphatase family signature 124 151 IPR006186 GO:0016787
Gabi627g00007 265 PRINTS Serine/threonine phosphatase family signature 61 85 IPR006186 GO:0016787
Gabi627g00007 265 PRINTS Serine/threonine phosphatase family signature 181 201 IPR006186 GO:0016787
Gabi627g00007 265 PRINTS Serine/threonine phosphatase family signature 28 55 IPR006186 GO:0016787
Gabi627g00007 265 Gene3D - 2 250 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi627g00007 Gabi-Chr627 136739 146239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi627g00007 4 184 Calmodulin-binding Proteins AT5G63870 35.023 2.47e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi627g00007 K06269 - gmx:100791655 474.552