Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi627g00005 ATGGAACGTGGGGTTCTTGATGCTATCATCAATAGGCTGCTTGAAGTAAGAGGGAAACCTGGGAAACAGGTTCAGCTTTCAGAGGCAGAAATCAAGCAGCTTTGTATGGTCTCCAGAGATATCTTCTTGAAGCAACCCAATCTGTTGGAACTCGAGGCACCAATTAAGATATGTGGAGATATCCATGGTCAATATTCTGATCTTTTGAGACTTTTTGAGCATGGTGGATTGCCTCCTCGCTCCAATTACTTATTTTTAGGGGATTATGTGGATCGTGGAAAGCAAAGTCTTGAGACAATATGTCTTCTTCTTGCCTATAAAATAAAATACCCAGGAAACTTTTTCCTTCTTAGGGGAAACCATGAATCTGCTTCTATAAACCGTGTCTATGGATTTTATGATGAATGTAAAAGGAGATTCAATGTCAAGCTTTGGAAAATATTTGCAGATTGTTTCAACTGTTTGCCTGTGGCAGCTCTCATTGATGAAAAGATATTATGTATGCATGGTGGACTCTCTCCTGAATTGCACAATCTAAATCAGATAACTAGTTTGCCACGTCCAATGGAAGTACCTGAAACTGGTCTATTATGTGACCTACTATGGTCTGATCCTAGTAAACACACTCAGGGTTGGGGAACCAATGAACGTGGAGTTTCATATACTTTTAGTGCTGGCATGGTGACAAAATTTCTTGAAAAACATGACCTTGACTTGATTTGTAGAGCACACCAGGTTGTTGAAGATGGATATGAATTTTTTGCTAATAGACAACTTGTGACTATCTTTTCTGCGCCTAATTACTGTGGAGAGTTTGACAATGCTGGAGCAATGATGACTGTGGATGAGAGTCTTACGTGCTCTTTTCAAATATTAAAGCCTGTGGATAAAAGGCCCAAGTTTGGTTTTCGGAGCACAACTTCATTTAAGCATGCATTTCTTGGTGCTAAAGAATGA 957 0.395 MERGVLDAIINRLLEVRGKPGKQVQLSEAEIKQLCMVSRDIFLKQPNLLELEAPIKICGDIHGQYSDLLRLFEHGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPGNFFLLRGNHESASINRVYGFYDECKRRFNVKLWKIFADCFNCLPVAALIDEKILCMHGGLSPELHNLNQITSLPRPMEVPETGLLCDLLWSDPSKHTQGWGTNERGVSYTFSAGMVTKFLEKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMTVDESLTCSFQILKPVDKRPKFGFRSTTSFKHAFLGAKE 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi627g00005 318 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Gabi627g00005 318 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Gabi627g00005 318 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Gabi627g00005 318 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Gabi627g00005 318 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Gabi627g00005 318 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Gabi627g00005 318 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Gabi627g00005 318 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Gabi627g00005 318 FunFam Serine/threonine-protein phosphatase 1 302 - -
Gabi627g00005 318 SUPERFAMILY Metallo-dependent phosphatases 19 298 IPR029052 -
Gabi627g00005 318 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 298 - -
Gabi627g00005 318 CDD MPP_PP1_PPKL 5 294 - -
Gabi627g00005 318 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Gabi627g00005 318 Gene3D - 2 305 IPR029052 -
Gabi627g00005 318 SMART pp2a_7 26 296 IPR006186 GO:0016787
Gabi627g00005 318 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi627g00005 Gabi-Chr627 136300 146239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi627g00005 33 239 Calmodulin-binding Proteins AT5G63870 32.258 6.51e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi627g00005 K06269 - gmx:100791655 577.015