Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi623g00010 ATGGAACCGCCAGTTGTCAGATCGAGAGGTCGCCCGAGGAAACGGAGAAGAAAAGAGGATGAAGATGAAGGAAAAACGGTTCCTGATGCGAAAGGGCTAGCTGTGGGGACAAGACCGATAGCATTGGTTGGACGATACGTGCTGAAAGAGTTTCCTAGAAATGGAGTTTTTCTCGGGAAAGTTGCGTATTACGAGAGTGGGTTGTATAGAGTCAATTACGAGGATGGTGATTACGAGGATTTAGATAGCGGTGAGGTTCGTCCGATACTTCTCAATGATGGTGATTTCGATGATGATTTAGCTCGGAGGAGGGGAAAATTAGAGGAATTAATGTTGCAGAAGAGTGAAAAGGTCGCAGATATGTCGGAGAAGGGTTCTGTTGACTCGAACAAAGAGGTATCCGCGGTTGATGTGCCTGCTTCGAGTGAATTGAACGATGGGTTATCGATTGAAAACAATGAGGAAGATGATGACGAAGCTGATGTTGATTCGTCAAGGGATAGTGAGTCTGATTCCGAGACACCGCCTGTGCCGCCGCCATTGCAGTTGCCGCCGTCTTCGGGAACTATTGGCGTGCCCGAGCCATATGTCTCACACCTCTTTTCTGTTTATGGATTCTTAAGATCATTCAGCACTCGCTTGTTTCTACTACCGTTTACTTTGGATGAGTTTGTTGGTTCTCTTAATTGCCGAGTTTCAAACACATTGTTTGACGCCGTTCATGTTTCCCTAATGCGGGCATTGAGGCATCGTCTTGAAACCCTTTCATCTGAGGGCTCGGAGCTTGCATCACACTGCCTTAGGTGCAATGATTGGAGCTTGCTCGATACATTGACTTGGCCTGTTTTTGTGATTCAGTATTTATTAGTTAGTGGATACACAAAAGGACCTGAATGGAAAGGATTTTATGACGAGATTATTAGTGGCGAGTATTATTTATTGCCTGTAAGTAGGAAGTTAGTGATATTGCAAATTCTCTGTGATGATGTTTTGGAATCTGATGAGCTAAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATGGATTATGATGCCGAGGATATACTTCCTGCAGAAATGGGGACTAGAAGAGTCCATCCAAGATATGCCAAGACTTCTGCCTGCAACGATAAAGAAGCTATGCAGTTTGTTCCAGCATCAAATGCTGTGAGCCAACCTGGTAACTCTCTTTCATATTTCAGAGACACTAAAAGTACCGAGGATGGTGATGTTGATAGAAATGGAGATGAATGTCGCCTCTGCGGTATGGATGGGACCCTGCTTTGTTGTGATGGGTGTCCTTCTGCTTATCATTCAAGGTGTATTGGTGTGATGAAAATGTTTATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATTAATATGACCGGGCCAACAATTGCAAAGGGAACAGCACTTAAAGGGGCTGAAATATTTGGAATGGATTTGTATGGGCAACTCTTCATTGGTACTTGTGACCACTTACTTGTGCTCAATATTGACAATGATGAATTTCATCTTAAATATTACAATCAGAATGACATTCCTAAAGTTCTCCAAGTGCTTTGTGATTCTATGCAGCATAGACCAATATACTATGGTATTTGCATGGCAGTCTTACGATATTGGAATGTTCCAGAAAATTTCTTGCCTCTTTCTGTTTCAACTGGAACAATTGTAAACTCAGCAAGTATAAAAGAAGAGACAAAGTTCTCTACTTCATTACTTCCTCCTTTGGGTGAAGACAACCATAAACCTGTTAGTTTGGGGAAGGGAGAGTACCCTCTAACTACTGTGAGTTTGATTCATACTGATAATATGGTGCCATCTCTCTATGCTTCATCAGTTACCACCCAAAGTCCTGCTCCTGAAAGTAGTGTCAGTGCTTGCAGTAAAGAGCATCCTACTGTGGATACGAAGATTCCTGAGGAAACTAGGATGGAGTCAGTCATCTCTGCTGGTTCTGTTTCTGTTAGTTACCAGTCTGATGTGAGCTATCGAAGTTCTCTTAATAGGCCAACTACAGTAGATCCTGCTAAGTGTGCTTTGGTAAACAGCCGAACTAATTATTATGGCCATGCAAATGATATGGGGTTGCCTATGAGTTTTTCGTTGCAAACCAAAGAAAGTACTCAAGCTGGTTTTGGAAAATCTGAAGGCAATGTAACCAATGATTTTGGATACATGGGTTTCTCTTATAAACCTCAGTCATACATTAATTACTACATGCATGGTGATTTTGCTGCATCTGCAGCTGCTAAATTTGCCGTTCTTTCTTCAGAGGAATCCAGGTCGGAGGGCCATATTTCCGACAATCAGAAGAAAACTGCATCTGGAAACACTTATTTGCAAGCAAAAGCGTTCTCACTAACTGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCTTTTCTTGTAAAGCTCCTGTTTCGAGTAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGTCACAAAAAGTGCTATGAAAATCTTTGCTGGTTTTTCTCCTATAAGGAGTGGAGAGGGAATTCTTCCTAGCATTGCAACTTACATTATATACATGGAGGAATGTCTACGTGGCTTAATAGTTGGGCCCTTCCTAACTGCAAGCTACAAAAAGCAATGGCGTAACCGAGTGGAACAAGCCACAACATTTAGTGCAATCAAGCCACTTTTACTTAAACTTGAGGAGAACATTCGTATGATTGCTTTTTGTGGGGACTGGATTAAGCTGGTGGATGATTGGTTGGTTCGATTCTCCGTAATACAAAATGCTGCACCTTCTCTTGGAACAACTCAGAAACGTGTACCTAGTGGAAGGCGTTACAAGAAGCGGTCAGCTGCTGATGAAGCTACAGCTGATGGTTGCCATGAAAACTTTGTGTGGTGGCGTGGTAGCAAATTCACCAAATTTATATTCCAGAAAGCAGTTTTGCCAAAATCCATGGTAAAAAAAGCAGCTCGCCAAGGTGGTTGGAGGAAAATTTCTGGTATATTGTATGCTGATGGCTCTGAAATCCCTAAAAGAAGCAGACAGCTGGTTTGGAGAGTTGCAGTTCAAATGAGTAGGAATGCATCGCAGCTGGCACTTCAGGTCAGATATCTAGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCGGAGCAGAACATCCAGGATGGAAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACAGAAAACTTGTAGAGGGAAAAAGTTGTTATGGAATAGCTTTTGGGAATCAAAAGCATCTTCCTTCTCGGGTGATGAAAAGTGTTGTTGAAATAGAGCAAGGTCCAGAAGGAAAGGAAAAGTATTGGTTTTCTGAAACTCGCATTCCTTTATATTTGATAAAAGAATACGAGGAAGGTAATAAAAAAGTACCGTCTGATGAAGAGCACCTGAGTGTTGCACCTCAGTTGTCCAGAAGGAAGTTGAAAGCTACCTGCAAGGACATATTTTTTTACCTTACCTGCAAGAGAGACAACTTGGTCATGCTCTCGTGTTCTGTGTGTCTGAAGGGTGTTTTAATTCGGAATGCTCACAAGTGCAATGCATGCCAAGGTTATTGTCATGAGGGCTGTTCCATGAGTTCAGCAGTCTCTGGAAATGGAGGTGAGTACTTGACCACATGCAAGCAATGTTACCATGCCAAATTACTTTCTCTGAAAGAGACTAGTAATGAATCTCCAACCAGTCCCTTACTCTTACAAGGACGACAAAATAGCTCTCGGACAGTTTTGAAGGGACCAGGGTCTAAATGTCATGATGAAACACTGAAATCTGCCAGGACAAAGGCTAGTCATACTGACATGAATCAAGTTACTTCTATGACAGTTTTGAAGGGGCCAAGGCCTAAATTTTATGATCAAGCACTGACTTCTACCAGGACTAAGGATAGTCCTGCTGACATGAAACAAGTTGCTTCTGATTCCACTTTGGCAGCAAAAAGCCGTCGCAAGAATTGTTCTTGGGGTATTATATGGAAAAAGAAAAATAATGAAAGTACAGACATTGATTTCAGGCTCAAAAACATACTTTTAAAGGGAGGTTCAGGCATGCCTCAATTGGAACCTGTTTGTCACTTGTGCCGTCAGCCATATAGATCTGATTTGATGTATATTCGCTGTGAGACATGCCAACATTGGTATCATGCTGAAGCTGTTGAGCTTGAAGAATCCAAAATTTTTTGTGTGTTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGTGTGTCCTTACTCTGATTTGAAGCTTAAGACTCAGGAGGGCAAGAAATCACACACAAGGGCTTCAAAGAAAGAGCATTCTGGAGCAGATTCTGATTCCGGAACATTTTCTGATGTTAAAGAGTGTGAAGCTGCTACTCCTGTCTTTCCTGTAGAGGATGATCCTCTGCTTTTCTCTCTTTCAAGTGTTGAGCTGATTACAGAACCCAAGTTAGATGTAGATGTTGAGTGGAACACTGTCTCTGGGCCAGTGCCTCAGAAACTACCAGTGAGAAGGCATGTTAAGGTTGAGGGGGATGATGATGGTTCTTTTGGAGGTAAACCTTCACATGCTGAATTCTCAACACACAATGAAGCAGGTAATCTGTCCAAATCTACAGAGGTGTTATCACCTTTAGAATATGACTCTGCTGTGCGCTTTGACAATGATCTGCTGATTGACTCTGAAAGTTTAAATTGTGAATACACGGAGTTTGAACCCCATACCTACTTCTCTGTAACGGAATTGCTGCACCCAGGTGATGGTGGCCAGTTTGAGGAAGTTGATGTGTCTGGGGACTTGTCAGGATATTTGGAAAATTCTTCTACCCTTGTTCCTGAAGAATATGGGGGTTTTAGTTTAGTTGATAAATCAGATTCTGCAATTTCCTTACAAGACAGTGTTTATAGTTGTTGGAAGTGTTCTCAAATGGAACCAGCCCCTGATCTCTGTTGTGAGATTTGTGGGATTTTGATTCATAGCCAGTGTTCACCCTGGGTTGAATCACCATCCAGGCTTGGAAGTTGGAGGTGTGGGAATTGCCGTGAATGGCAATAG 5124 0.4233 MEPPVVRSRGRPRKRRRKEDEDEGKTVPDAKGLAVGTRPIALVGRYVLKEFPRNGVFLGKVAYYESGLYRVNYEDGDYEDLDSGEVRPILLNDGDFDDDLARRRGKLEELMLQKSEKVADMSEKGSVDSNKEVSAVDVPASSELNDGLSIENNEEDDDEADVDSSRDSESDSETPPVPPPLQLPPSSGTIGVPEPYVSHLFSVYGFLRSFSTRLFLLPFTLDEFVGSLNCRVSNTLFDAVHVSLMRALRHRLETLSSEGSELASHCLRCNDWSLLDTLTWPVFVIQYLLVSGYTKGPEWKGFYDEIISGEYYLLPVSRKLVILQILCDDVLESDELKAEMNMREESEVGMDYDAEDILPAEMGTRRVHPRYAKTSACNDKEAMQFVPASNAVSQPGNSLSYFRDTKSTEDGDVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKINMTGPTIAKGTALKGAEIFGMDLYGQLFIGTCDHLLVLNIDNDEFHLKYYNQNDIPKVLQVLCDSMQHRPIYYGICMAVLRYWNVPENFLPLSVSTGTIVNSASIKEETKFSTSLLPPLGEDNHKPVSLGKGEYPLTTVSLIHTDNMVPSLYASSVTTQSPAPESSVSACSKEHPTVDTKIPEETRMESVISAGSVSVSYQSDVSYRSSLNRPTTVDPAKCALVNSRTNYYGHANDMGLPMSFSLQTKESTQAGFGKSEGNVTNDFGYMGFSYKPQSYINYYMHGDFAASAAAKFAVLSSEESRSEGHISDNQKKTASGNTYLQAKAFSLTASRFFWPSSEKKLVEVPRERCGWCFSCKAPVSSKRGCMLNHAALSVTKSAMKIFAGFSPIRSGEGILPSIATYIIYMEECLRGLIVGPFLTASYKKQWRNRVEQATTFSAIKPLLLKLEENIRMIAFCGDWIKLVDDWLVRFSVIQNAAPSLGTTQKRVPSGRRYKKRSAADEATADGCHENFVWWRGSKFTKFIFQKAVLPKSMVKKAARQGGWRKISGILYADGSEIPKRSRQLVWRVAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDRKLVEGKSCYGIAFGNQKHLPSRVMKSVVEIEQGPEGKEKYWFSETRIPLYLIKEYEEGNKKVPSDEEHLSVAPQLSRRKLKATCKDIFFYLTCKRDNLVMLSCSVCLKGVLIRNAHKCNACQGYCHEGCSMSSAVSGNGGEYLTTCKQCYHAKLLSLKETSNESPTSPLLLQGRQNSSRTVLKGPGSKCHDETLKSARTKASHTDMNQVTSMTVLKGPRPKFYDQALTSTRTKDSPADMKQVASDSTLAAKSRRKNCSWGIIWKKKNNESTDIDFRLKNILLKGGSGMPQLEPVCHLCRQPYRSDLMYIRCETCQHWYHAEAVELEESKIFCVLGFKCCKCRRIKSPVCPYSDLKLKTQEGKKSHTRASKKEHSGADSDSGTFSDVKECEAATPVFPVEDDPLLFSLSSVELITEPKLDVDVEWNTVSGPVPQKLPVRRHVKVEGDDDGSFGGKPSHAEFSTHNEAGNLSKSTEVLSPLEYDSAVRFDNDLLIDSESLNCEYTEFEPHTYFSVTELLHPGDGGQFEEVDVSGDLSGYLENSSTLVPEEYGGFSLVDKSDSAISLQDSVYSCWKCSQMEPAPDLCCEICGILIHSQCSPWVESPSRLGSWRCGNCREWQ 1707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi623g00010 1707 SMART PHD_3 1191 1239 IPR001965 -
Gabi623g00010 1707 SMART PHD_3 419 462 IPR001965 -
Gabi623g00010 1707 SMART PHD_3 1383 1428 IPR001965 -
Gabi623g00010 1707 SMART PHD_3 1659 1704 IPR001965 -
Gabi623g00010 1707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 469 IPR013083 -
Gabi623g00010 1707 MobiDBLite consensus disorder prediction 117 189 - -
Gabi623g00010 1707 CDD PHD_SF 1659 1703 - -
Gabi623g00010 1707 PANTHER PHD FINGER FAMILY PROTEIN 38 1671 - -
Gabi623g00010 1707 SUPERFAMILY FYVE/PHD zinc finger 387 463 IPR011011 -
Gabi623g00010 1707 SMART testlast3 194 254 IPR018501 -
Gabi623g00010 1707 CDD Tudor_AtPTM-like 43 91 IPR047365 -
Gabi623g00010 1707 ProSiteProfiles DDT domain profile. 194 254 IPR018501 -
Gabi623g00010 1707 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 298 341 IPR028942 -
Gabi623g00010 1707 MobiDBLite consensus disorder prediction 1449 1472 - -
Gabi623g00010 1707 Pfam PHD-finger 420 462 IPR019787 -
Gabi623g00010 1707 ProSitePatterns Zinc finger PHD-type signature. 420 461 IPR019786 -
Gabi623g00010 1707 MobiDBLite consensus disorder prediction 1449 1467 - -
Gabi623g00010 1707 ProSiteProfiles Zinc finger PHD-type profile. 417 464 IPR019787 -
Gabi623g00010 1707 MobiDBLite consensus disorder prediction 1 31 - -
Gabi623g00010 1707 MobiDBLite consensus disorder prediction 149 166 - -
Gabi623g00010 1707 Pfam DDT domain 197 250 IPR018501 -
Gabi623g00010 1707 CDD PHD2_CHD_II 420 461 - -
Gabi623g00010 1707 SUPERFAMILY FYVE/PHD zinc finger 1379 1437 IPR011011 -
Gabi623g00010 1707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1373 1446 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi623g00010 Gabi-Chr623 135633 147215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi623g00010 284 549 EF-hand Containing Proteins AT5G22760 51.661 1.17e-79 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gabi623g00010 DDT 6.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi623g00010 - - lang:109351702 2416.34