Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi621g00001 ATGGAGCTGGCTTTGAGCTTAGGAGACACACCAAAACACTTCACTTTTATTGAACCTAGTTTCACTGCAGGGAAAACCATAGAGGAGAAAAGAAACGCTTGTGAGAGAAACGGTTCATTGGATCCACCGGTTCAACTCGACCTTCTTCCTTTCTCTCCGGTTCTAAGATCCCAACCATCTTCTCAGCTTCGAATTCCATGGCTCAATGAATCATGTGGCCCGGCGAGGGTGCTGGACGTGAACCTTTTTCCGGTGGCCGCCGCGGCGGAGGACGCCGACGACGGCACGTCACTGTCATCGTCACCCAACAGCGCGGTGTCACCGTTTCAGATGGATTTCAGTGTCAGGAATAACGGTAACGCAGAAGATGGAGGAAGAAACAAGAGAGAGAACGAGGGTGAAGCTGAGAGAGCGAGTTCAAGAGCGAGTGATGACGACGAAAATGGCTCAACTCGGAAGAAACTCAGACTCTCTAAGGAACAATCAGCTTTTCTTGAAGAAAGCTTCAAAGAACACACCACTCTTAATCCTAAGCAGAAACTTGCACTTGCGAAACAGTTGAATCTTCGTCCTCGTCAAGTTGAAGTTTGGTTTCAAAACAGAAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGTTGTGAGACTTTGACAGAAGAGAATAGGAGGTTACAGAAGGAACTACAAGAACTAAGAGCCTTGAAAACTTCACAGCCATTCTACATGCAGCTTCCAGCTACAACTCTCACCATGTGTCCCTCTTGTGAAAGGGTGGCTACAAATTCCTGCACCGGAGGTGCCGCCGCCGCCACCAACAAAACCTCCACAGCGAATGCCGCCACTAACAATGGTTCTCAAACCCCATTGGGTTTGTCTCTTAGCAAGCCCAGAATCTTACCCTTCCCTAATGCCCAGGCCCAAGCCCAAGCCCAAGCCCATCAGATGGCTTCATGA 975 0.4872 MELALSLGDTPKHFTFIEPSFTAGKTIEEKRNACERNGSLDPPVQLDLLPFSPVLRSQPSSQLRIPWLNESCGPARVLDVNLFPVAAAAEDADDGTSLSSSPNSAVSPFQMDFSVRNNGNAEDGGRNKRENEGEAERASSRASDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSCTGGAAAATNKTSTANAATNNGSQTPLGLSLSKPRILPFPNAQAQAQAQAHQMAS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi621g00001 324 Coils Coil 214 244 - -
Gabi621g00001 324 SUPERFAMILY Homeodomain-like 144 209 IPR009057 -
Gabi621g00001 324 MobiDBLite consensus disorder prediction 94 121 - -
Gabi621g00001 324 Pfam Homeobox associated leucine zipper 208 242 IPR003106 GO:0006355|GO:0043565
Gabi621g00001 324 MobiDBLite consensus disorder prediction 91 157 - -
Gabi621g00001 324 FunFam Homeobox-leucine zipper protein 18 137 213 - -
Gabi621g00001 324 SMART halz 208 251 IPR003106 GO:0006355|GO:0043565
Gabi621g00001 324 ProSitePatterns 'Homeobox' domain signature. 183 206 IPR017970 GO:0000981|GO:0006355
Gabi621g00001 324 MobiDBLite consensus disorder prediction 122 157 - -
Gabi621g00001 324 ProSiteProfiles 'Homeobox' domain profile. 148 208 IPR001356 GO:0003677
Gabi621g00001 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 39 287 - -
Gabi621g00001 324 CDD homeodomain 152 209 IPR001356 GO:0003677
Gabi621g00001 324 Gene3D - 156 206 - -
Gabi621g00001 324 Pfam Homeodomain 152 206 IPR001356 GO:0003677
Gabi621g00001 324 SMART HOX_1 150 212 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi621g00001 Gabi-Chr621 110228 111745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi621g00001 43 266 Homeobox Transcription Factor Family AT5G47370 57.328 5.94e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi621g00001 Homeodomain 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi621g00001 K09338 - gmx:100779138 429.869