Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi61g00002 ATGGGTAGGGGAAAGATTCAAATGAAAAAAATTGAGAAAGAAAGCAGCCGTCAAGTTACCTTTTCAAAGCGTCGAGGTGGTCTTCTGAAGAAAGCTTCCGAGCTATCTGTTCTTTGTGACGCCCAAGTAGCCGTGATAATCTTCTCACAGAAAGGAAGGCTCTATGAATTCTCAAGTTCTGACATCACAAAGATTTTGGAACGGTACCAAAAATATACCAAAGATTTTTCCGCCAGTAAGTTTGGGGAAGATTATATCCAGATTTCCTTATATGCTGAACGCATATCAGGGGGCGTTGCTGCCACTGAAGGAGAATCTGATCAACAGGAGCCTATTGTTGCACAACAATTCGTTTCCTCAAAATCATTGCTGGAACATATAATGCTGATTCAAGCTGCAAACCCTCTGGCAAAAATGGATCCACTGCTCATTTTAACTGAGACACATGAAACACAGGATGTACTCTAG 468 0.4145 MGRGKIQMKKIEKESSRQVTFSKRRGGLLKKASELSVLCDAQVAVIIFSQKGRLYEFSSSDITKILERYQKYTKDFSASKFGEDYIQISLYAERISGGVAATEGESDQQEPIVAQQFVSSKSLLEHIMLIQAANPLAKMDPLLILTETHETQDVL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi61g00002 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi61g00002 155 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gabi61g00002 155 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi61g00002 155 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Gabi61g00002 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi61g00002 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi61g00002 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi61g00002 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi61g00002 155 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Gabi61g00002 155 PANTHER MADS BOX PROTEIN 3 105 - -
Gabi61g00002 155 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi61g00002 155 FunFam MADS-box transcription factor MADS-MC 13 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi61g00002 Gabi-Chr61 33591 55950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi61g00002 1 79 MADS-box Gene Family AT5G62165 75.949 2.33e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi61g00002 SRF-TF 2.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi61g00002 - - vun:114190787 140.969