Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi61g00001 ATGGGTAGGGGAAAGATTCAAATGAAAAAAATTGAGAAAGAAAGCAGCCGTCAAGTTACCTTTTCAAAGCGTCGAGGTGGTCTTCTGAAGAAAGCTTCCGAGCTATCTGTTCTTTGTGACGCCCAAGTAGCCGTGATAATCTTCTCACAGAAAGGAAGGCTCTATGAATTCTCAAGTTCTGACATCACAAAGATTTTGGAACGGTACCAAAAATATACCAAAGATTTTTCCGCCAGTAAGTTTGGGGAAGATTATATCCAGCAACTGAAGTTTGACTTTGCAAGCATGGCAAAGAAGATTGAGCTTCTTGAACTTTCTAAAAGGAAGATGCTGGGACACAACTTGAGTTCATGTTCTTATGATGAACTCCAAGGAATTGAGGACCAGCTTGAGAGAAGTTTGCAAAGCGTCAGGCTGCGAAAGGATCAACTGTTTAAGGAGCATATCGAACAACAACAAAGCCAGGAGAGAAACTTGCTCAAAGAGAATGCCAAATTAAGTGCAATGGTGAGATTATGA 519 0.4085 MGRGKIQMKKIEKESSRQVTFSKRRGGLLKKASELSVLCDAQVAVIIFSQKGRLYEFSSSDITKILERYQKYTKDFSASKFGEDYIQQLKFDFASMAKKIELLELSKRKMLGHNLSSCSYDELQGIEDQLERSLQSVRLRKDQLFKEHIEQQQSQERNLLKENAKLSAMVRL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi61g00001 172 Coils Coil 149 169 - -
Gabi61g00001 172 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Gabi61g00001 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi61g00001 172 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi61g00001 172 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Gabi61g00001 172 Coils Coil 127 147 - -
Gabi61g00001 172 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi61g00001 172 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gabi61g00001 172 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 153 - -
Gabi61g00001 172 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi61g00001 172 ProSiteProfiles K-box domain profile. 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi61g00001 172 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi61g00001 172 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Gabi61g00001 172 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi61g00001 172 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi61g00001 172 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi61g00001 Gabi-Chr61 18334 55950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi61g00001 1 151 MADS-box Gene Family AT2G45660 59.868 1.08e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi61g00001 K-box 7.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi61g00001 - - gmx:100800580 248.054