Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi618g00006 ATGAGACGAATGAATAATGAGATTGAAGATGAGGGGCTCCCCAACAATCAGACTGGGTCACAATTGAACGATGAGGGTTATGAAGGAAGTGCCTGTGGAATTGTTCTGAAGAAAGGGCCATGGACATCTTCTGAAGATGATATTTTGGTGGATTATGTCAAGAACCATGGGGAGGGAAACTGGAATTCTGTTCAGAAGCAGACAGGCCTGTTACGTTGCGGAAAAAGTTGTCGACTGAGGTGGGCTAATCACCTAAGGCCAAATTTAAAGAAAGGGGCATTTACTGCAGAAGAGGAGCGGTTGATTGCTGAACTTCATGCAAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGTACAGATAATGAGATAAAGAACTACTGGAACACCCGGATCAAGAGGCGTCAACGGGCTGGCTTGCCACTTTATCCTCCCGATGTGTGTTTGCAAGCATTGCAAGATAGTCAACTTGGCCAAAGCACTGGTGGAATTAATGGTGGCAGTAAAGTGCATCCTGATTTTTTGCAGAAAAACAATTATGAGATACATGACGCAATATTTGAAAGTCTGAAGGATAATCAGGAAATGTTAGATTATGTGTCCGAGCTTCCTGATATTTCTGCTTATAGCAGTATGCTGAAAGGTCTTGATTCTTCTCAGTATTGTAATTTTTGGCCATCAACTCCACCTAACCATAAACGTCTTCGAGAGTCAACAATGCCATTTTTTGATTCCAGTGGTATGAACAGAGATGGTTTTTATCCATTTGATCATATTCTGGATAATACTTCTGATAAGATTGCGCAATCATTCGGAACGCAATCACCCCTTGATCGTGGTCCCTCCTCACACAGTTCTATTTGTTTCAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTCTGTGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAATTGATTTAGGTAGCTGGGGCACATCTCCCCCACCTCCTTTGCTTGAGTCAGTTGATGATTTCATTCAGTCTCCTACGCCAGTAAGTACTCTGGAGTCAAATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCTTTACTTTATCAAGCGAAGACTCTTGGCAGTTCAAAGAACCATTATTCTGACAAGAGTTCAAATTCATCTACTGCAACTCCTCGTGACAGAGCAGACAGCTCTGTTTTGAACATGTATGAGACAGAATGGGAAGACTATGCTGACCCTCTATCTCCATTTGGTGCAACTTCAATATTGAACGAGTGCCCTGCTGTTAGTGCCAACATAAATTCATTAGATGAACAGCCATCCGTTCAGACCTTTAAGGGCAACATTGTGAAATCAGAGTCTGTTGACCAGGTTTGGTCCCCTAAAAATGAAAATCAAACCATGTCTCTGTGGAATATTACTTGCCCAGACTTCTTACTTGCTTCAGATTGGCATGAGCAGGGTTCTGGGCATGGCAAGAACCAAGCCATCATGACTGATGCTAAATCGGCCCTTCTTGGAGATGATTTAGCCCCTGGCTACAAGAACATGATTGCGGGAACATCTAAGTCAAGTCAGATTATCGTCAAAATATCATTGATATGA 1620 0.429 MRRMNNEIEDEGLPNNQTGSQLNDEGYEGSACGIVLKKGPWTSSEDDILVDYVKNHGEGNWNSVQKQTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPDVCLQALQDSQLGQSTGGINGGSKVHPDFLQKNNYEIHDAIFESLKDNQEMLDYVSELPDISAYSSMLKGLDSSQYCNFWPSTPPNHKRLRESTMPFFDSSGMNRDGFYPFDHILDNTSDKIAQSFGTQSPLDRGPSSHSSICFSHSLSNGNSSTSKPTSVAVKLELPSLQYPEIDLGSWGTSPPPPLLESVDDFIQSPTPVSTLESNCSSPQNSGLLDALLYQAKTLGSSKNHYSDKSSNSSTATPRDRADSSVLNMYETEWEDYADPLSPFGATSILNECPAVSANINSLDEQPSVQTFKGNIVKSESVDQVWSPKNENQTMSLWNITCPDFLLASDWHEQGSGHGKNQAIMTDAKSALLGDDLAPGYKNMIAGTSKSSQIIVKISLI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi618g00006 539 SMART sant 37 87 IPR001005 -
Gabi618g00006 539 SMART sant 90 138 IPR001005 -
Gabi618g00006 539 CDD SANT 40 85 IPR001005 -
Gabi618g00006 539 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 508 - -
Gabi618g00006 539 Gene3D - 37 90 - -
Gabi618g00006 539 MobiDBLite consensus disorder prediction 10 24 - -
Gabi618g00006 539 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Gabi618g00006 539 MobiDBLite consensus disorder prediction 380 401 - -
Gabi618g00006 539 FunFam Transcription factor GAMYB 93 139 - -
Gabi618g00006 539 MobiDBLite consensus disorder prediction 1 24 - -
Gabi618g00006 539 Gene3D - 93 139 - -
Gabi618g00006 539 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Gabi618g00006 539 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Gabi618g00006 539 ProSiteProfiles Myb-like domain profile. 36 85 IPR001005 -
Gabi618g00006 539 SUPERFAMILY Homeodomain-like 37 132 IPR009057 -
Gabi618g00006 539 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Gabi618g00006 539 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Gabi618g00006 539 CDD SANT 93 134 IPR001005 -
Gabi618g00006 539 MobiDBLite consensus disorder prediction 380 400 - -
Gabi618g00006 539 FunFam MYB-related transcription factor 37 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi618g00006 Gabi-Chr618 82330 87516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi618g00006 35 519 MYB Transcription Factor Family AT3G11440 44.622 6.02e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi618g00006 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi618g00006 K09422 - gmx:100810415 838.565