Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi614g00004 ATGGCATCCTCACCTTCAGGGTCTTATAAAAGAGCTCGAGCCATTAACAACGGAACCGTGACAGTGTCATGCCTTGTTGATGGGTGCAATTCAGATCTTACTAATTGTAGAGATTATCATAGGCGCCATAAGGTCTGTGAACTCCATTCCAAGACTCCAGAGGTCACAATTGGTGGCCTGAAGCAAAGGTTCTGCCAACAATGTAGTAGGTTCCATTCGCTGGAGCAATTTGATGAAAGAAAAAGAAGCTGCAGGAAACGTTTAGATGGACATAACCGAAGGAGAAGAAAGCCTCAACCTGAACCTCTCCCACGACCTGGTAGTTATTTGTCCAATTACCAAGGCACCCAGTTGCTACCATTCTCAAGTCCACAAGTATATCCTTCCACTGCCATGGTGAACTCTGCTTGGAGTGGTGGACTTGTTACTTCTTGTGCAGATGCTAGGCTGCACAACCACAACCATCAGCAACAAGTGCATTTGGCTGATAAGCAAGATCTTTTTCTTGGATGTTCTCCTATCAGCTATAAAGAAGGGAAGCAACTTGCATTCTTGCATGGTGAGAATCCCTCCATGGCCACACTCAACAACCAAAACTCACCTCTTGCAGCAGCTTCTGTGTGTCAGAGGTTTCTCAGGATCAGCCCTTTGTCAGAAAGTGGTGGGGTGAGAAACAAAATGTTCTGTGATAGCTTAACAACTTCAGTCCATGAATCACCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACACACACACCTGAAAATGGTTTAAACCAAATGGTGCAGCCTCACTCAATGTCCTTTATGCAGCCCTTAGGCTTGACCCTGCATGATAACAACTTAGAGTCCATGGACCGAGTCTTGGTTCCCAGTGGGGGTGACCATTGTTCCTCAATGTATAACATTGGTTCTGATGGATCACAGGGCAATGAAGCCCCTCAACTATTTCCCTTTCAATGGGAATAG 969 0.4561 MASSPSGSYKRARAINNGTVTVSCLVDGCNSDLTNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLPRPGSYLSNYQGTQLLPFSSPQVYPSTAMVNSAWSGGLVTSCADARLHNHNHQQQVHLADKQDLFLGCSPISYKEGKQLAFLHGENPSMATLNNQNSPLAAASVCQRFLRISPLSESGGVRNKMFCDSLTTSVHESPCALSLLSSSQTHTPENGLNQMVQPHSMSFMQPLGLTLHDNNLESMDRVLVPSGGDHCSSMYNIGSDGSQGNEAPQLFPFQWE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi614g00004 322 Gene3D - 15 85 IPR036893 GO:0003677|GO:0005634
Gabi614g00004 322 SUPERFAMILY SBT domain 22 103 IPR036893 GO:0003677|GO:0005634
Gabi614g00004 322 MobiDBLite consensus disorder prediction 85 109 - -
Gabi614g00004 322 ProSiteProfiles Zinc finger SBP-type profile. 21 98 IPR004333 GO:0003677
Gabi614g00004 322 FunFam Squamosa promoter-binding-like protein 14 15 85 - -
Gabi614g00004 322 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 306 IPR044817 GO:0003677
Gabi614g00004 322 Pfam SBP domain 24 97 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi614g00004 Gabi-Chr614 68811 71897 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi614g00004 24 322 SBP-box Gene Family AT5G50670 43.564 1.69e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi614g00004 SBP 4.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi614g00004 - - gmx:100787407 450.669