Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi614g00003 ATGAAAGGGGAATTTTCTGTTGACTTGAAGCTTGGTCAAGTGGGGAATTCTGGCACTGAATTCAATTCCAAAGAGGCTATTGGTGGAGTCTCCAAAATGGCATCCTCACCTTCAGGGTCTTATAAAAGAGCTCGAGCCATTAACAACGGAACCGTGACAGTGTCATGCCTTGTTGATGGGTGCAATTCAGATCTTACTAATTGTAGAGATTATCATAGGCGCCATAAGGTCTGTGAACTCCATTCCAAGACTCCAGAGGTCACAATTGGTGGCCTGAAGCAAAGGTTCTGCCAACAATGTAGTAGGTTCCATTCGCTGGAGCAATTTGATGAAAGAAAAAGAAGCTGCAGGAAACGTTTAGATGGACATAACCGAAGGAGAAGAAAGCCTCAACCTGAACCTCTCCCACGACCTGGTAGTTATTTGTCCAATTACCAAGGCACCCAGTTGCTACCATTCTCAAGTCCACAAGTATATCCTTCCACTGCCATGGTGAACTCTGCTTGGAGTGGTGGACTTGTTACTTCTTGTGCAGATGCTAGGCTGCACAACCACAACCATCAGCAACAAGTGCATTTGGCTGATAAGCAAGATCTTTTTCTTGGATGTTCTCCTATCAGCTATAAAGAAGGGAAGCAACTTGCATTCTTGCATGGTGAGAATCCCTCCATGGCCACACTCAACAACCAAAACTCACCTCTTGCAGCAGCTTCTGTGTGTCAGAGGTTTCTCAGGATCAGCCCTTTGTCAGAAAGTGGTGGGGTGAGAAACAAAATGTTCTGTGATAGCTTAACAACTTCAGTCCATGAATCACCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACACACACACCTGAAAATGGTTTAAACCAAATGGTGCAGCCTCACTCAATGTCCTTTATGCAGCCCTTAGGCTTGACCCTGCATGATAACAACTTAGAGTCCATGGACCGAGTCTTGGTTCCCAGTGGGGGTGACCATTGTTCCTCAATGTATAACATTGGTTCTGATGGATCACAGGGCAATGAAGCCCCTCAACTATTTCCCTTTCAATGGGAATAG 1065 0.4535 MKGEFSVDLKLGQVGNSGTEFNSKEAIGGVSKMASSPSGSYKRARAINNGTVTVSCLVDGCNSDLTNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLPRPGSYLSNYQGTQLLPFSSPQVYPSTAMVNSAWSGGLVTSCADARLHNHNHQQQVHLADKQDLFLGCSPISYKEGKQLAFLHGENPSMATLNNQNSPLAAASVCQRFLRISPLSESGGVRNKMFCDSLTTSVHESPCALSLLSSSQTHTPENGLNQMVQPHSMSFMQPLGLTLHDNNLESMDRVLVPSGGDHCSSMYNIGSDGSQGNEAPQLFPFQWE 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi614g00003 354 SUPERFAMILY SBT domain 54 135 IPR036893 GO:0003677|GO:0005634
Gabi614g00003 354 MobiDBLite consensus disorder prediction 117 141 - -
Gabi614g00003 354 Gene3D - 47 117 IPR036893 GO:0003677|GO:0005634
Gabi614g00003 354 ProSiteProfiles Zinc finger SBP-type profile. 53 130 IPR004333 GO:0003677
Gabi614g00003 354 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 338 IPR044817 GO:0003677
Gabi614g00003 354 FunFam Squamosa promoter-binding-like protein 14 47 117 - -
Gabi614g00003 354 Pfam SBP domain 56 129 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi614g00003 Gabi-Chr614 68811 71897 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi614g00003 2 354 SBP-box Gene Family AT5G50670 41.417 3.45e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi614g00003 SBP 5.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi614g00003 - - gmx:100787407 484.567