Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi609g00002 ATGGAGCCAGCAATGTACGGACACGCTAACCCCATGACCATGTCCGGACAGATCGGAGACGGAGAAAACGACGACGGCTCCGGCGAGGTCGCCATCGACGGCCACCACCACATTCAGTACGAAACGCATGCTCTTGAAGAAGATAGCGGTGGAGTTGGTGGTAGCGGCGTCATTGAGGATGTTAATTCCGATGCTGTATATGTTTCTGGCCACGGTGGTGATGGAGGCCTTGAATTGTCTTTTCCACGATGCGACGAGTCTAGCCAGCTTACGCTGTCGTTTCGTGGTCAAGTTTATGATTTCCCTTCTGTTACACCTGATAAGGTACAAGCGGTATTGTTACTGTTGGGTGGATGTGAACTATCTTCAGCGGGTTCGGCAAGTGTGGATACTGTGCCTCAACAAAATCAGAGGGGTTCAATGGAATATCCTGCAAGATGTAGTCAACCACAGCGAGCTGCCTCATTAATTAGGTTCCGGCAGAAGAGGAAAGAGCGATGCTTTGATAAGAAAGTTAGATATGGTGTACGTCAAGAAGTTGCACTCAGGATGCACCGTAACAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCTAATAGTTGGGGTACAGATCAGGAGTCGGGGCAGGATGATAGTCAATCACAAACCTCATGCACACATTGTGGCGTAAGTTCAAAATCCACCCCAATGATGCGGCGAGGACCATCTGGTCCACGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGTCAAATAGGGGTGCTTTGAGAGACCTTTCTAAGAAAAATCAGGAACACTCTCTTGCACCATCTGAGCAGGTTGGTGAAGGCAATAACTCGGACTGTCGGACTCTTATCCCTACGCCTAACGATCTTGCTGCTTTCTCTGAGAATGATAACTCAGCTTTGGTAGCTGATCGTTGA 927 0.4833 MEPAMYGHANPMTMSGQIGDGENDDGSGEVAIDGHHHIQYETHALEEDSGGVGGSGVIEDVNSDAVYVSGHGGDGGLELSFPRCDESSQLTLSFRGQVYDFPSVTPDKVQAVLLLLGGCELSSAGSASVDTVPQQNQRGSMEYPARCSQPQRAASLIRFRQKRKERCFDKKVRYGVRQEVALRMHRNKGQFTSSKKQDGANSWGTDQESGQDDSQSQTSCTHCGVSSKSTPMMRRGPSGPRSLCNACGLFWSNRGALRDLSKKNQEHSLAPSEQVGEGNNSDCRTLIPTPNDLAAFSENDNSALVADR 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi609g00002 308 PANTHER GATA TRANSCRIPTION FACTOR 28 22 281 IPR045280 GO:0006355
Gabi609g00002 308 Pfam CCT motif 152 194 IPR010402 GO:0005515
Gabi609g00002 308 ProSitePatterns GATA-type zinc finger domain. 220 247 IPR000679 GO:0006355|GO:0043565
Gabi609g00002 308 MobiDBLite consensus disorder prediction 193 233 - -
Gabi609g00002 308 SMART GATA_3 214 267 IPR000679 GO:0006355|GO:0043565
Gabi609g00002 308 ProSiteProfiles CCT domain profile. 152 194 IPR010402 GO:0005515
Gabi609g00002 308 MobiDBLite consensus disorder prediction 185 238 - -
Gabi609g00002 308 CDD ZnF_GATA 219 265 IPR000679 GO:0006355|GO:0043565
Gabi609g00002 308 Gene3D - 210 270 IPR013088 GO:0006355|GO:0008270
Gabi609g00002 308 SMART tify_2 83 118 IPR010399 -
Gabi609g00002 308 MobiDBLite consensus disorder prediction 267 285 - -
Gabi609g00002 308 ProSiteProfiles Tify domain profile. 83 118 IPR010399 -
Gabi609g00002 308 ProSiteProfiles GATA-type zinc finger domain profile. 214 273 IPR000679 GO:0006355|GO:0043565
Gabi609g00002 308 Pfam GATA zinc finger 220 255 IPR000679 GO:0006355|GO:0043565
Gabi609g00002 308 MobiDBLite consensus disorder prediction 262 285 - -
Gabi609g00002 308 Pfam tify domain 86 117 IPR010399 -
Gabi609g00002 308 MobiDBLite consensus disorder prediction 1 28 - -
Gabi609g00002 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi609g00002 Gabi-Chr609 71897 78127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi609g00002 5 270 Tify Gene Family AT4G24470 54.478 1.01e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi609g00002 CCT 1.8e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi609g00002 - - pvu:PHAVU_008G182900g 442.58