Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00200 ATGCGAAATCCGAAGATGGAGGAGGAAGAGCACGAGGTGTACGGAGCAGAGATCCCAGACGTCGGAGAGATGGAAGGAGACGTGGACATGTCCGCCGCCGACGATGACGCCGCCGTGAAAGAGCTCGACGAGATGAAGCGGCGCTTGAAGGAAATGGAAGAGGAAGCCGCCGCACTTCGTGAGATGCAAGCCAAGGTCGAGAAGGAGATTGATCCTGCCGGTGCAGCTGCTTCTCAGGCAAACAAGGAGGAGACAGATTCTCGGTCTGTTTTCGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCATGTGGTACAGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTATTGAAACTGAAGCTGTTCAAGAGGCTATCTTGTTGAACGAATCTGAATTGCACGGCCGTCAATTGAAGGTTATGCCTAAGAGGACCAATGTTCCTGGAATGAAGCAATATCGACCTAGGCGCTTTAATCCTTATATGGCATATGGCTTCAGGAGGCCATATACTCCTCCTCACTTTTACTCCCCCTATGGATATGGGAAGGTACCTAGGTTTAGAAGGGCATCTCGTTACATGCCCTACTATTAG 651 0.4931 MRNPKMEEEEHEVYGAEIPDVGEMEGDVDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIDPAGAAASQANKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFIETEAVQEAILLNESELHGRQLKVMPKRTNVPGMKQYRPRRFNPYMAYGFRRPYTPPHFYSPYGYGKVPRFRRASRYMPYY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00200 216 MobiDBLite consensus disorder prediction 1 21 - -
Gabi606g00200 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Gabi606g00200 216 SMART rrm1_1 89 160 IPR000504 GO:0003723
Gabi606g00200 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 164 IPR000504 GO:0003723
Gabi606g00200 216 CDD RRM_II_PABPs 89 159 - -
Gabi606g00200 216 Gene3D - 29 160 IPR012677 -
Gabi606g00200 216 MobiDBLite consensus disorder prediction 1 18 - -
Gabi606g00200 216 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 8 173 - -
Gabi606g00200 216 Coils Coil 35 69 - -
Gabi606g00200 216 SUPERFAMILY RNA-binding domain, RBD 79 185 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00200 Gabi-Chr606 1657390 1661451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00200 89 159 Eukaryotic Initiation Factors Gene Family AT2G36660 34.722 3.29e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00200 K14396 - gmx:100789721 374.785