Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00186 ATGCCTGTAGAAATGGACTTCATATTTGTGCTATTGTTATTGGGTTGCTTATGTTCTTTTGTGTTGCCTGATTCGCAAGGAGATGCACTATTTGCATTGAAGCTATCATTGAATGCTTCAGCTCAGCAGCTTACTGACTGGAACCAAAATCAAGTGAATCCTTGTACTTGGTCACGTGTTAGCTGTGACCTGAACTCCTCCTATGTTATTCAAGTTTCACTAGCATTTATGGGATTCGCGGGATTCTTGACTCCAAGAATTGGAGTTCTAAAATATCTTCAAACTCTTTCTTTGCAAGGGAATGGCATCACTGGTGACATACCAAAAGAATTCGGAAACCTGACAAGCTTGGTCAGGTTGGATTTGGAAAACAACAGATTAACTGGTGAAATACCATCGTCCCTTGGTAATCTTACAAAGCTTCAATTCTTGACACTGAGTCAAAACAATCTCAGTGGGACTATTCCTGAATCACTTTCCAGTCTCCCTAGCTTGATCAATGTTTTGCTAGATTCAAATAATCTTAGTGGTCAAATTCCGGAACGGTTATTTGAAGTTCCTAAATACAATTTCACTGGAAATAAGTTGAATTGTGGTGTGAATTATCATCACCCTTGCGCAACTGATAATGCAGATCAAGGTTCATCACATAAACCAAAAATTGGCCTCGTAGTTGGAATTATTATAGGGTTAGTCATTATCCTTTTCCTTGGTGGTCTGCTATTCTTTTGGTGCAAGGGTAGACACAAAGGCTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGACCGCCGAATTGCATTTGGTCAACTAAAAAGATTTGCATGGAGAGAACTACAGATAGCTACAGACAGCTTCAGTGAGAAAAATGTTCTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTTACTGATAACACAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGGGGGAGATGCAGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTAGCTGTCCATAGGAACCTGTTACGGCTGATTGGTTTTTGTACTACTCCAACCGAGCGTCTCTTAGTTTATCCCTTCATGCAGAACTTAAGCGTTGCCTATCGTCTACGAGAACTCAAACCTGGGGAATCTGTTTTGGATTGGCCTACAAGAAAACGAGTGGCTCTGGGAACAGCCCGTGGCTTAGAATATCTTCACGAGCATTGCAATCCTAAAATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAGGCAGTTGTTGGCGACTTTGGTTTGGCAAAGTTAGTTGATGTTCGAAAGACTAATGTGACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCTGAATATTTGTCCACTGGAAAGTCTTCAGAAAGGACTGATGTTTTTGGTTACGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGGGCAATTGACTTTTCACGTTTGGAAGAGGAAGATGATGTGCTATTGCTTGACCATGTTAAGAAACTAGAACGGGAGAAAAAACTGGATGCTATTGTTGACCGCAACCTAAATAAGAATTACAACATACAAGAGGTAGAAATGATGATACAAGTTGCATTGCTCTGCACGCAAGCAACGCCAGAGGACCGTCCACTGATGTCCGAGGTTGTAAGAATGCTGGAAGGAGAAGGGTTGGCTGAACGGTGGGAGGAATGGCAGCATGTGGAGGTCAATCGGAGGCAAGAATACGAGAGATTACAAAGAAGATTTGACTGGGGAGAAGATTCGGTTTATAATCAAGATGCCATTGAATTGTCTGGTGGGAGATGA 1836 0.4161 MPVEMDFIFVLLLLGCLCSFVLPDSQGDALFALKLSLNASAQQLTDWNQNQVNPCTWSRVSCDLNSSYVIQVSLAFMGFAGFLTPRIGVLKYLQTLSLQGNGITGDIPKEFGNLTSLVRLDLENNRLTGEIPSSLGNLTKLQFLTLSQNNLSGTIPESLSSLPSLINVLLDSNNLSGQIPERLFEVPKYNFTGNKLNCGVNYHHPCATDNADQGSSHKPKIGLVVGIIIGLVIILFLGGLLFFWCKGRHKGYKREVFVDVAGEVDRRIAFGQLKRFAWRELQIATDSFSEKNVLGQGGFGKVYKGVLTDNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGESVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKKLDAIVDRNLNKNYNIQEVEMMIQVALLCTQATPEDRPLMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYERLQRRFDWGEDSVYNQDAIELSGGR 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00186 611 ProSiteProfiles Protein kinase domain profile. 288 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi606g00186 611 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Gabi606g00186 611 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Gabi606g00186 611 FunFam Somatic embryogenesis receptor kinase 1 257 364 - -
Gabi606g00186 611 FunFam Somatic embryogenesis receptor-like kinase 1 365 582 - -
Gabi606g00186 611 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Gabi606g00186 611 SUPERFAMILY L domain-like 25 194 - -
Gabi606g00186 611 SUPERFAMILY Protein kinase-like (PK-like) 268 563 IPR011009 -
Gabi606g00186 611 FunFam Putative LRR receptor-like serine/threonine-protein kinase 23 208 - -
Gabi606g00186 611 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
Gabi606g00186 611 Gene3D Transferase(Phosphotransferase) domain 1 365 582 - -
Gabi606g00186 611 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 573 - -
Gabi606g00186 611 SMART serkin_6 288 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi606g00186 611 Pfam Protein kinase domain 289 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi606g00186 611 Gene3D Ribonuclease Inhibitor 23 208 IPR032675 -
Gabi606g00186 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00186 Gabi-Chr606 1570675 1584429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00186 4 611 Receptor kinase-like Gene Family AT5G10290 78.454 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi606g00186 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00186 - - gmx:100793416 1093.18