Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00185 ATGCAATCAACACTTGACACAGAGGATCTTCGTGTCCCCCTTCAAAACCTCTCCCAACTCAGCACACGAATGGATTCTCTGCAACGCTTCATATCCCAATCCATCAACACCAACACTCTCCTCACCAACCACCACATGGCCATAGTCTCCGACGAGATTGTCTCGGCCGTTCGCCACCTCATCATCAACAGCGCCGCTCTTGTCTCCTGCACGACAACACCCTACCCTTTTTCGGAAACCGTTCCTTCAAAGAAGCCAACGTTGGATTCGAAAGAAGCCGAGCTTGTCGACGACGACAGGGAACATTGTGAAATTGTGGAGTTCGACGCGGTGGAGCTGTTGGAGAACGACTTTCATTTCTGCGAGGTTTGCGGGAAAGGGTTTAAGCGCGACATGAACCTGCGAATGCACATGCGGGCGCACGGGGATGAGTTTAAGATTAAGACCCACGAAGCGTTGTCGAAGAAGAAGCGTTTCGGGGAAACGCGCTTAAGAGGGACGTGGTTTTCTTGTCCCTTTGAAGGTTGCAACAGGAACAAGGTGCACAAGAAGTTCAGGCCTCTGAAGTCGATGTTTTGTTTGAGGAACCATTTCAAGAGAAGCCATTGCCCGAAAACGCACACGTGTGATCGGTGTCGGAAGAAGAGTTTTGCGATGCTTTCGGACTTGAAGAGCCACGCGAAGCAGTGCCGGGGAGAGTCCACGTGGAAGTGCACGTGCGGAACCACGTTTTCGAGGAAGGATAAGTTGTTTGGACACGTGGCACTGTTCGAGGGGCATTTGCCTGCGCTTGAAGAGAAAGGGAAGCAAGTGGCGGTGGATCATGAAGTGTTGATGAATGAAAGTGATTGTTTCGATGGGTTACCTGAAGGGTTCTTCGATGATTTGGATGATTTTGGGTTTGGCTCCATTCACAACAACTGGGATAAGGATTTGCCCCATTTATAA 948 0.5032 MQSTLDTEDLRVPLQNLSQLSTRMDSLQRFISQSINTNTLLTNHHMAIVSDEIVSAVRHLIINSAALVSCTTTPYPFSETVPSKKPTLDSKEAELVDDDREHCEIVEFDAVELLENDFHFCEVCGKGFKRDMNLRMHMRAHGDEFKIKTHEALSKKKRFGETRLRGTWFSCPFEGCNRNKVHKKFRPLKSMFCLRNHFKRSHCPKTHTCDRCRKKSFAMLSDLKSHAKQCRGESTWKCTCGTTFSRKDKLFGHVALFEGHLPALEEKGKQVAVDHEVLMNESDCFDGLPEGFFDDLDDFGFGSIHNNWDKDLPHL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00185 315 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 91 270 IPR044300 GO:0010044|GO:0010447
Gabi606g00185 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Gabi606g00185 315 SMART c2h2final6 119 141 IPR013087 -
Gabi606g00185 315 SMART c2h2final6 207 228 IPR013087 -
Gabi606g00185 315 SMART c2h2final6 169 202 IPR013087 -
Gabi606g00185 315 SUPERFAMILY beta-beta-alpha zinc fingers 116 147 IPR036236 -
Gabi606g00185 315 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Gabi606g00185 315 Pfam Zinc-finger of C2H2 type 120 139 - -
Gabi606g00185 315 Gene3D Classic Zinc Finger 110 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00185 Gabi-Chr606 1567378 1568351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00185 104 264 C2H2 Transcription Factor Family AT1G34370 55.556 4.80e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi606g00185 zf-met 0.0089 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00185 - - gmx:100798348 385.956