Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00181 ATGGCTGAGACCAGGCAATTCCTTCTCCCCAATCAATTCGATATTAATCAAATTATTTCAGAAGCACAGCATCGATGGCTGCGTCCAGCTGAAATTTGTGAAATTCTCAGTAATTATAAGAAGTTCCGAATAGCTTCAGAACCAGCATGTATGCCACCAAGTGGTTCCCTTTTCCTATTTGATCGGAAGGTGCTGAGATACTTCAGAAAGGATGGCCATAACTGGAGGAAGAAAAAAGATGGAAAAACGGTGAGGGAAGCTCATGAGAGACTTAAGGCTGGAAGTGTGGACGTGTTACACTGCTACTATGCCCATGGACAAGAAAATGAATATTTTCAAAGACGCACTTACTGGATGCTTGAAGAGGAACTCTCACACATTGTTCTTGTCCATTATCGCGAAGTGCAGGGAACCAAGGCAAATTTTAGATGTGCTAAAGAAAATGAAGAATCTCTTCCTTATGCTCAACCAACTGACGAAATAATGCCCAACACAGAGATGGGTACTTCTTTAGCATCTAGTTTTCATCCACATAGTTACCAGGTCTCTTCACAAACTATAGATACAACAAGCATGAACGAGGCTCAAGCATCAGATTATGAAGAAGCTGAATCTGCATTCGATAACCATGCAAGTTCTGAGTTCTACTCTTTCCTGGAGCTGCAACGCCCTGTTGTTGAGAAGATTAAATCTCAACTGGCTGATATTTATTGTCCTCTGCCACTCATAAATGATCAAGAGGTGTTGTTTGACACTCCTGGGGTGAATTATATCTCACTCGGTCAAGCCAATAAAATCAAAGACTTTGATAATGTTGGATTAGCATATGAATCCCAAAAACTCTTCGGCTTTTCATCGGGGGAAGATATATTAGAAAATAAGGTTGGAAGTCAACATGTGTTTTTTCAGCCTTCATTTCCTGAAACACGAGATAACATGGGAATCAATAGCAATCCCTCTCAAGGAGATGAGATAATGCGGCCACTTTTTACCACCAGCATTGCTAAACAGCATGAGAATGGAAGTTTTATACAAGCTGAAGGAAATTGGCAGGCTTCTGGTTTCAATTATTTAAGCAAATCCAGTTGGCCCATAGATAGTGTGTATTCAGGCTCAACGTGTGAGGTTGGTTTTAACAACTGTGAGCAGGAAGTTAATAAAGTTGATTTTCAAAAATCCTTGGAACTTTGTCTTCTACATCCACACGAACAAAACAAGGTTCTTATGCGAAATGACCCTCAAGAAAAAGTTTTAAATGCAAAAGACAAGATAAAATCAGATCTGGAGGCCAATAAAAACCTGGATGGAATAGAAGACACTTATTTCACATTGAAGAAGACTCTGTTAGATGGATTTCCAGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAACTAGGAGATGTGGAAGAATCAAATATACAATCCACTTCTGATACTTATTGGGATACAGTTGAAAACGAAAATGAGGTTGGCAGCACAACAATTCCTTCCCAAGTGCACCTAGACTCCTATGTATTGGATCCATCTATTTCCCATGATCAGCTTTTTAGCATTATTGACTATTCTCCAAGCTGGACATTTGAAGGCTCAGAAGTTAAGGTTCTCATTTCAGGACGATTCTTAAGGAGTCAACATGAAGCAGAAAGCTGTAAATGGTCATGCATGTTTGGCGGGGTAGAAGTGCCAGCAGAGATCATTGGGAATGGCGTTCTTTGTTGCCATACTCCTCCACACAAGGCTGGGAGGGTTCCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGTAGTGAAGTGCGAGAATTTGATTTCCAAGTCAACTATAATCAAGAAGTCAACACTGCAGGTGAGAACGGAGGCAGCACTTTTGATACTTTTAATATTCGATTTGGAGAACTGTTGTCTCTGGGGCATCCCTTCCCTCAGAATATAGATTCAAATAGTGTAACTGAGAAATCTCAACTGAGAAGTAAAATCAGTTCTTTGCTGAGGGAGGAAAAGGATGATTGGGACAAGCTGCTGAAACTTACTCTAGAGAAAGATTTTTCTCCAGAAAATTTACAGGAGCAGCTGCTTCAAAATCTTCTGAAAGATAAGTTAGAGGCGTGGCTCCTTCAGAAAATAACTGAAGATGGGAAAGGCCCTAATGTATTAGATGAGGGTGGCCAAGGTGTGCTTCATTTTGCGGCTGCTCTTGGCTATGATTGGGCCCTACAACCCACAATAGTTGCAGGTGTGAATGTGAACTTTCGTGATGTAAATGGATGGACTGCTCTTCATTGGGCAGCATTTTGTGGCAGGGAGCGCACAGTTGCTTCCCTCATCTCTCTGGGTGCAGCACCCGGAGCGCTGACTGATCCATGCCCGGAACATCCTTCAGGTAGAACACCAGCTGATCTAGCTTCTGCCAATGGACACAAAGGAATTGCAGGGTATCTTGCGGAATCTTTCCTAAGTGCACACCTCTCATCTCTTGATTTGAACTTGGAAGTGGGAGAAAATTCTGGAGCAAAAGTAGTAGTACAAAGAGCACTAGGACATAACACTGCTCAAGTTAATGATGATGAGGGCTTATCATATGAACTGTCACTGAAAGATTCACTGGCTGCAGTGTGTAATGCCACCCAAGCTGCTGCACGTATTCATGAAGTTTTCAGAGTGCGATCATTCCAGAGAAAACAACTGACAAAATATGGAGATGACAAATTTGGAATATCCGATGAACATGCCCTTTCACTTGTAACAGTGAATGCAAAACTAAACAAGGTTAGACAACGCGACGAGCCTGTCCATGCTGCTGCAATACGAATCCAGAACAAATTCCGAGGTTGGAAGGGCAGAAAAGAGTTTTTGATGATTAGACAACGAATAGTAAAAATTCAGGCTCACGTTAGAGGTCACCAGGTTAGGAAAAACTATGGGAAGATAATTTGGTCTGTTGGAATTATGGAGAAGGTTATTTTACGTTGGCGTCGAAAAGGTAGTGGTTTACGTGGATTTAAATCGGAGGCCATATCAGAGGGAACTATGGTACAAGATGTATCTTCCAAGGAGGATGACTATGATTTCTTAAAAGAAGGAAGGAAGCAAACTGAGAAAAGGTTGCAAAAAGCCCTTGCTAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATACCATAGGCTCTTGAATGTTGTGACTGAGATCCAAGAAAATCAGGTAAAGCATGATACGGGTTTTGACAATCTAGAAGAAACAAGAGAATTCGATAACCTCACTGATCTTGAAGCATTATTGGACGAAGATACTTTCATGCCTTCAGCCACTTAG 3336 0.4143 MAETRQFLLPNQFDINQIISEAQHRWLRPAEICEILSNYKKFRIASEPACMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGQENEYFQRRTYWMLEEELSHIVLVHYREVQGTKANFRCAKENEESLPYAQPTDEIMPNTEMGTSLASSFHPHSYQVSSQTIDTTSMNEAQASDYEEAESAFDNHASSEFYSFLELQRPVVEKIKSQLADIYCPLPLINDQEVLFDTPGVNYISLGQANKIKDFDNVGLAYESQKLFGFSSGEDILENKVGSQHVFFQPSFPETRDNMGINSNPSQGDEIMRPLFTTSIAKQHENGSFIQAEGNWQASGFNYLSKSSWPIDSVYSGSTCEVGFNNCEQEVNKVDFQKSLELCLLHPHEQNKVLMRNDPQEKVLNAKDKIKSDLEANKNLDGIEDTYFTLKKTLLDGFPAEEGLKKLDSFNQWMSKELGDVEESNIQSTSDTYWDTVENENEVGSTTIPSQVHLDSYVLDPSISHDQLFSIIDYSPSWTFEGSEVKVLISGRFLRSQHEAESCKWSCMFGGVEVPAEIIGNGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFQVNYNQEVNTAGENGGSTFDTFNIRFGELLSLGHPFPQNIDSNSVTEKSQLRSKISSLLREEKDDWDKLLKLTLEKDFSPENLQEQLLQNLLKDKLEAWLLQKITEDGKGPNVLDEGGQGVLHFAAALGYDWALQPTIVAGVNVNFRDVNGWTALHWAAFCGRERTVASLISLGAAPGALTDPCPEHPSGRTPADLASANGHKGIAGYLAESFLSAHLSSLDLNLEVGENSGAKVVVQRALGHNTAQVNDDEGLSYELSLKDSLAAVCNATQAAARIHEVFRVRSFQRKQLTKYGDDKFGISDEHALSLVTVNAKLNKVRQRDEPVHAAAIRIQNKFRGWKGRKEFLMIRQRIVKIQAHVRGHQVRKNYGKIIWSVGIMEKVILRWRRKGSGLRGFKSEAISEGTMVQDVSSKEDDYDFLKEGRKQTEKRLQKALARVKSMVQYPEARDQYHRLLNVVTEIQENQVKHDTGFDNLEETREFDNLTDLEALLDEDTFMPSAT 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00181 1111 ProSiteProfiles IQ motif profile. 937 965 IPR000048 GO:0005515
Gabi606g00181 1111 SMART iq_5 958 980 IPR000048 GO:0005515
Gabi606g00181 1111 SMART iq_5 935 957 IPR000048 GO:0005515
Gabi606g00181 1111 Gene3D - 684 848 IPR036770 -
Gabi606g00181 1111 Gene3D - 934 982 - -
Gabi606g00181 1111 Coils Coil 1027 1047 - -
Gabi606g00181 1111 Pfam IQ calmodulin-binding motif 961 979 IPR000048 GO:0005515
Gabi606g00181 1111 Pfam IQ calmodulin-binding motif 937 956 IPR000048 GO:0005515
Gabi606g00181 1111 SMART ANK_2a 799 828 IPR002110 GO:0005515
Gabi606g00181 1111 SMART ANK_2a 760 789 IPR002110 GO:0005515
Gabi606g00181 1111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 928 985 IPR027417 -
Gabi606g00181 1111 SUPERFAMILY E set domains 525 610 IPR014756 -
Gabi606g00181 1111 SMART CG_1_2 18 136 IPR005559 GO:0003677
Gabi606g00181 1111 ProSiteProfiles Ankyrin repeat region circular profile. 760 785 - -
Gabi606g00181 1111 ProSiteProfiles IQ motif profile. 959 983 IPR000048 GO:0005515
Gabi606g00181 1111 SUPERFAMILY Ankyrin repeat 713 821 IPR036770 -
Gabi606g00181 1111 Pfam Ankyrin repeats (3 copies) 732 822 IPR002110 GO:0005515
Gabi606g00181 1111 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Gabi606g00181 1111 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Gabi606g00181 1111 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 13 1074 - -
Gabi606g00181 1111 ProSiteProfiles Ankyrin repeat profile. 760 792 IPR002110 GO:0005515
Gabi606g00181 1111 Pfam IPT/TIG domain 525 600 IPR002909 -
Gabi606g00181 1111 Gene3D Immunoglobulins 518 614 IPR013783 -
Gabi606g00181 1111 FunFam Calmodulin-binding transcription activator 2 518 614 - -
Gabi606g00181 1111 FunFam Calmodulin-binding transcription activator 2 935 983 - -
Gabi606g00181 1111 FunFam Calmodulin-binding transcription activator 2 689 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00181 Gabi-Chr606 1530880 1540404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00181 1 1092 CAMTA Transcription Factor Family AT5G64220 46.510 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gabi606g00181 Ank_2 5.5e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00181 K21596 - gmx:100798875 1777.3