Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00143 ATGGCAACAGCTATAGATATCTACAATAGCAACATGACACCGGAATTCTTAGATCCTTATAGTGAAGAGCTGATGAAAGCACTAAAGCCTTTTATGAAAAGTGATTCATCTACCTCTTCTTCCACCTCGAAATCACAACCTTCCAGCATCTCTTGTTCTCCATTTTCATCCAATTCTCTCCCCAATTTGTATCCCAACCTCTCCAGCACTTCCCACTTGTTTTCCCAAAGCCAAACCAGTTCCCTTGGGCTCAACCAACTCACCCCATCACAAATTCTTCAGATTCAAGCCCAAATCTACATTCTTCAACAACATCAACAACAGCAGCACGTGGCTGACGTAGCCACAGCTTCTCTCCAACGCAAAAAGTCAACCCAGTTGCAGCACCAAAACGAACACGCCCTTAGCTTCCTCACACCAAAACCCGTTCCTATGAAGCACGTTGGCACTACACTGAAACCAACAAAACTGTACCGTGGGGTGAGACAGAGGCATTGGGGAAAATGGGTCGCTGAGATCAGACTCCCCAAGAACCGCACTCGTCTCTGGCTTGGCACATTTGATACCGCAGAGGAAGCAGCGTTGGCTTATGATAACGCAGCATATAAGCTTAGGGGTGAGTTTGCACGACTAAATTTCCCTCATCTTCGCCACCATGGAGCCCACGTTTTCGGTGAGTTTGGAGATTACAAGCCTCTCCCTTCCTCGGTCGATACCAAGCTCCAAGCTATTTGTGAAAGCTTAGCCATTTCACATAAACATGGAAACAACGTAGAAAAGCCCTGCACCTCTGTTGAAGATAGAAAGCCTATTATGATGATACATGACAGAGAATTGGTTTTTCCTGAGTTCGAGGATGTTAAGTTCGAGAACCCAAAGTTGTGGCCCATGTCTGATGAATCTTTTTCACCCTGTTGTTCTTCGCCTGAATCCGGTGTTACTTTCTTGGATTTCTCGGATTCTAATCGGTGGGATGAGACAGAGAATTTTGGGTTGGAGAAGTACCCTTCTTTGGAGATTGATTGGGCAGCTATATGA 1038 0.4557 MATAIDIYNSNMTPEFLDPYSEELMKALKPFMKSDSSTSSSTSKSQPSSISCSPFSSNSLPNLYPNLSSTSHLFSQSQTSSLGLNQLTPSQILQIQAQIYILQQHQQQQHVADVATASLQRKKSTQLQHQNEHALSFLTPKPVPMKHVGTTLKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAYKLRGEFARLNFPHLRHHGAHVFGEFGDYKPLPSSVDTKLQAICESLAISHKHGNNVEKPCTSVEDRKPIMMIHDRELVFPEFEDVKFENPKLWPMSDESFSPCCSSPESGVTFLDFSDSNRWDETENFGLEKYPSLEIDWAAI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00143 345 CDD AP2 156 216 IPR001471 GO:0003700|GO:0006355
Gabi606g00143 345 Pfam AP2 domain 158 207 IPR001471 GO:0003700|GO:0006355
Gabi606g00143 345 MobiDBLite consensus disorder prediction 33 52 - -
Gabi606g00143 345 FunFam Ethylene-responsive transcription factor 2 156 215 - -
Gabi606g00143 345 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Gabi606g00143 345 PRINTS Ethylene responsive element binding protein signature 180 196 IPR001471 GO:0003700|GO:0006355
Gabi606g00143 345 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700|GO:0006355
Gabi606g00143 345 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700|GO:0006355
Gabi606g00143 345 ProSiteProfiles AP2/ERF domain profile. 157 214 IPR001471 GO:0003700|GO:0006355
Gabi606g00143 345 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 345 - -
Gabi606g00143 345 SMART rav1_2 157 220 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00143 Gabi-Chr606 1286564 1288589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00143 4 345 AP2-EREBP Transcription Factor Family AT4G39780 47.093 5.29e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi606g00143 AP2 5.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00143 K09286 - qsa:O6P43_030451 355.525