Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00142 ATGGCAACAGCTATAGATATCTACAATAGCAACATGACACCGGAATTCTTAGATCCTTATAGTGAAGAGCTGATGAAAGCACTAAAGCCTTTTATGAAAAGTGATTCATCTACCTCTTCTTCCACCTCGAATTCCCACTTGTTTTCCCAAAGCCAAACCAGTTCCCTTGGGCTCAACCAACTCACCCCATCACAAATTCTTCAGATTCAAGCCCAAATCTACCAAAACGAACACGCCCTTAGCTTCCTCACACCAAAACCCGTTCCTATGAAGCACGTTGGCACTACACTGAAACCAACAAAACTGTACCGTGGGGTGAGACAGAGGCATTGGGGAAAATGGGTCGCTGAGATCAGACTCCCCAAGAACCGCACTCGTCTCTGGCTTGGCACATTTGATACCGCAGAGGAAGCAGCGTTGGCTTATGATAACGCAGCATATAAGCTTAGGGGTGAGTTTGCACGACTAAATTTCCCTCATCTTCGCCACCATGGAGCCCACGTTTTCGGTGAGTTTGGAGATTACAAGCCTCTCCCTTCCTCGGTCGATACCAAGCTCCAAGCTATTTGTGAAAGCTTAGCCATTTCACATAAACATGGAAACAACGTAGAAAAGCCCTGCACCTCTGTTGAAGATAGAAAGCCTATTATGATGATACATGACAGAGAATTGGTTTTTCCTGAGTTCGAGGATGTTAAGTTCGAGAACCCAAAGTTGTGGCCCATGTCTGATGAATCTTTTTCACCCTGTTGTTCTTCGCCTGAATCCGGTGTTACTTTCTTGGATTTCTCGGATTCTAATCGGTGGGATGAGACAGAGAATTTTGGGTTGGAGAAGTACCCTTCTTTGGAGATTGATTGGGCAGCTATATGA 873 0.4525 MATAIDIYNSNMTPEFLDPYSEELMKALKPFMKSDSSTSSSTSNSHLFSQSQTSSLGLNQLTPSQILQIQAQIYQNEHALSFLTPKPVPMKHVGTTLKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAYKLRGEFARLNFPHLRHHGAHVFGEFGDYKPLPSSVDTKLQAICESLAISHKHGNNVEKPCTSVEDRKPIMMIHDRELVFPEFEDVKFENPKLWPMSDESFSPCCSSPESGVTFLDFSDSNRWDETENFGLEKYPSLEIDWAAI 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00142 290 ProSiteProfiles AP2/ERF domain profile. 102 159 IPR001471 GO:0003700|GO:0006355
Gabi606g00142 290 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 5 290 - -
Gabi606g00142 290 CDD AP2 101 161 IPR001471 GO:0003700|GO:0006355
Gabi606g00142 290 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Gabi606g00142 290 PRINTS Ethylene responsive element binding protein signature 125 141 IPR001471 GO:0003700|GO:0006355
Gabi606g00142 290 FunFam Ethylene-responsive transcription factor 2 101 160 - -
Gabi606g00142 290 Gene3D AP2/ERF domain 102 160 IPR036955 GO:0003700|GO:0006355
Gabi606g00142 290 SUPERFAMILY DNA-binding domain 102 160 IPR016177 GO:0003677
Gabi606g00142 290 SMART rav1_2 102 165 IPR001471 GO:0003700|GO:0006355
Gabi606g00142 290 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00142 Gabi-Chr606 1286562 1288600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00142 4 290 AP2-EREBP Transcription Factor Family AT4G39780 55.709 2.32e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi606g00142 AP2 4.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00142 K09286 - gmx:100818839 362.073