Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00141 ATGGAAGAGAGAGAGAATATGAAAAGTTCAGCTTCTGAGTCTTGTGAAGTTGGTGATGAAGGGACAAATAAGAAACCAGTTCAAAAAATCCAAGAGTGTGAATTCTGTGGGAGGGAGTTCAACTCAGGAAATGCATTAGGTGGCCATAAAAGGTTGCACCTTCAAGCTCTAAGGAGAAAGAATGAGGCTAAAGATAAGGAGAAAGGGTCAAATGTTGTTGAGAATTCAATGGAAGAGAGAGAGAAGATGAAAAGTTCAGCTTTTGAGTCTTGTGAAGTTGGTGATGAACCAAAGGGTGATGAAGGGACAAATCAGAAACCAGTTAAAGAAATCCACAAGTGTGATTTCGGTTGGAGGGAGTTCAACACAGGAAATGCATTAGGTGGCCATAAAAGGTTGCATCTTCAAGCTCTAAGGAAAAAGAAGGAGGCTAAAGGTAAAGGCATCAAGTTTTCTGCTTCTGATAGGAAACTCATAAGGAGGAAAGGTCAGATGTTGTTAAGAATTCAATGGAAGAGAGAGAAGATGAAAAGTTCAACTTCTGAGTCTTGTGAAGTTGGAGATGAACCAAAGGGTGATGAAGGGACAAATCAAAAGCCAGTTCAAGAAATCCACAAGTGTGAATTCTTTGGGAGGGAGTTCAACTCAGGAAATGCATTAGGTGGCCATAAAAGGTTGCACCTTCAAGCTCTAAGGAAAAAGAAGAAGGATAAAGATGCCTTTGATGGTTGGATGGTTATGCAAAAGGCAGCTAAAGGGCGTAACATGAAAAGTTTGTTGGAGAATCAGGTTGATGGCTCGAAGGTACAGTCCACGGTTTTGCATTCCAATGCAGGAAGATCCACCGGTCAGAAGGGAACCTCGAAAGCTGCAGCCTTGAGCAGTGGGACAAACATGACAGGTGTTGTCACCTGA 915 0.4208 MEERENMKSSASESCEVGDEGTNKKPVQKIQECEFCGREFNSGNALGGHKRLHLQALRRKNEAKDKEKGSNVVENSMEEREKMKSSAFESCEVGDEPKGDEGTNQKPVKEIHKCDFGWREFNTGNALGGHKRLHLQALRKKKEAKGKGIKFSASDRKLIRRKGQMLLRIQWKREKMKSSTSESCEVGDEPKGDEGTNQKPVQEIHKCEFFGREFNSGNALGGHKRLHLQALRKKKKDKDAFDGWMVMQKAAKGRNMKSLLENQVDGSKVQSTVLHSNAGRSTGQKGTSKAAALSSGTNMTGVVT 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00141 304 MobiDBLite consensus disorder prediction 59 106 - -
Gabi606g00141 304 MobiDBLite consensus disorder prediction 275 304 - -
Gabi606g00141 304 Pfam C2H2-type zinc finger 32 55 - -
Gabi606g00141 304 Pfam C2H2-type zinc finger 112 136 - -
Gabi606g00141 304 Pfam C2H2-type zinc finger 211 229 - -
Gabi606g00141 304 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 14 145 IPR044653 GO:0003700
Gabi606g00141 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 53 IPR013087 -
Gabi606g00141 304 MobiDBLite consensus disorder prediction 178 200 - -
Gabi606g00141 304 Gene3D Classic Zinc Finger 31 134 - -
Gabi606g00141 304 MobiDBLite consensus disorder prediction 1 25 - -
Gabi606g00141 304 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Gabi606g00141 304 SMART c2h2final6 31 53 IPR013087 -
Gabi606g00141 304 SMART c2h2final6 205 227 IPR013087 -
Gabi606g00141 304 SMART c2h2final6 112 134 IPR013087 -
Gabi606g00141 304 SUPERFAMILY beta-beta-alpha zinc fingers 29 227 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00141 Gabi-Chr606 1248964 1283334 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00141 17 154 C2H2 Transcription Factor Family AT1G49900 34.028 2.30e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00141 - K09228 cqi:110685127 82.8037