Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00119 ATGGCGACCACACTGACTTGGAGGCTTCCTGCTAATGATCTGGAAAGAAATGGTGATGGGAAGGCTCAAGATTCAGAGCCCCCAACTCCACATTCTGTTCTGAAGATGGGATTGAGAGAGCGTAGCAGCAGCATGGAGGATCCAGATGGGACATTAGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTGTTCAAGAGAAAGAGTATTCCTTAAGGCAGTTATCGGAGCTTATAGATATGCGTGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGACAGGTTCATTGAATGTGAAGATACAGGCAGCAACCGTCTTGGGCTCCCTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTTTTGCTTGGAGGATGCATTCCTCCATTGCTTGGTCTGCTAAAGTCCAGTTCTACTGAAGGGCAGATTGCTGCTGCAAAGACTATTTATGCTGTCTCTCAAGATGGTGCAAAAGATCATGTTGGTTCAAAAATATTTTCAACTGAAGGAGTTGTACCAGTACTCTGGGAGCAGCTGCAAAGTGGCCTGAAGACAGGAAATGTAGTTGAAAGTTTATTGACTGGAGCATTGAAAAATCTCTCCAGCAATACTGAGGGATTCTGGAATGAAACAATACAGGCCGGAGGAGTGAACGTATTAATGAAGTTACTGGCAACAGGACAGCCTAGTACTTTAGCTAATGTGTGCTTTTTACTTGCTTCTCTAATGATGGAGGATGAATCTGTTTGTTCGAAGGTGTTGACAGCAGAGGCGACAAAACAACTCCTGAAACTATTAGGCCCCGGTAATGATGACCCTGTTAGAGCTGAAGCAGCCAGTGCTCTCAAATCTCTATCTGCCCAGTGCAAAGAAGCAAGGCGAGAGATAGCCAATTCCAATGGTATTCCTGCTTTGATCAATGCGACCATAGCTCCATCCAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAGGAGAATGCTATGTGTGCTCTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTTGGTCAAAGCCTTGAATCATGCACCTCACCTACCCAAATTGCTGACACATTAGGAGCTTTAGCATCAGCTCTTATGATATATGATAACAAGGCAGAATCTACCAGAGCATCAGATCCTTCTGTAGTTGAGCAGACATTAATCAAACAATTTAAACCTCGCTTGCCCTTCCTTGTGCAGGAACGGACCATTGAAGCTCTAGCTAGTTTGTATGGCAATCCCATACTCTCAACTAAACTTGCAAATTCTGATGCAAAACATTTGCTTGTTGGTTTAATAACAATGGCCGCCAATGAAGTGCAAGATGAGCTTATAAAAGCTCTCTTGACACTGTGCAATAGTGAAGACAGTCTATGGCGTGCACTTAAGGGTCGTGAAGGAATTCAGCTACTGATATCTCTTCTGGGACTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCCCTGCTTTGCCTTCTATCTAATGAAAATGATGAAAGTAAATGGGCAATCACTGCTGGCGGTGGTATACCTCCACTTGTTCAAATTTTGGAGACAGGATCTGCGAAAGCAAAGGAAGATTCTGCAAGAATCCTTAAGAACCTGTGCAATCATAGCGAAGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTGCTGTGGCTGTTGAAGAATGGAAGCCCAAATGGGAAGGATATTGCAGCAAAGACTTTACATCATTTAATTCATAAATCTGATACTACGGCTATCAGTCAGCTTACAGCGTTATTGACTAGTGATCTTCCTGATTCTAAGGTTTATGTTTTGGATGCTTTAAGAAGTATGCTTTCTGCTGCTCCTCTTAGTGACATTCTACGTGAAGGTAGTGCTGCCAGTGATGCATTTGATACCATGATAATATTATTGAGCTCTGCTAAGGAAGAAACTCAGGCAAAGTCTGCATCAGCTCTGGCAGGAATTTTCGAAACAAGGAAAGATGTACGTGAAAGTAGCTTTGCTGTTAAAACTCTTCGGTCAGCCATGAAATTGCTTAATGTTGAATCTGAAAGTATCCTAATGGAGTCCTCACACTGCCTGGCTGCAATATTTCTTTCCATTAAAGAGAACAGGGATGTAGCAGCTGTTGCAAGAGATGCAATATCCCCCCTAGTTGAACTAGCTAGCTCTTCAATTTTGGAAGTTGCAGAGATGGCAACGTGTGCTGTGGCAAATCTTATTTTGGATAGTGAAATTGCAGAGAAAGCTGATCCAGAAGAAGTTATCTTGCCTGCTACCAGAGTATTACATGAAGGCACAATATCGGGAAAAAGTCATGCTGCAGCAGCAATTGCTCGCCTCTTACATTCTCGGCAAGTTGATTATGCTGTAACTGATTGTGTGAATCGTTCTGGCACTGTTCTTGCATTAGTTTCTTTTTTAGATTCTGCTATTAATGGATCTGTTTCCACATCAGAGGCTCTAGAAGCACTTGCCATTTTGTCCAGGTCAGAACAGACCAGTGCACATAGCAAACCTGCATGTGCAGTTTTGGCCGAATTTCCTGAAAGCATAAGCCCAATAGTCCTGAGTATTGTTGATTCAACGCCGATGTTGCAGGATAAAACGATTGAGATTTTATCTCGATTATGCAAGGATCAGGCTGTTGTTTTAGGGCACGCTGTTACTTCTGCCTCTGGATGTATATCTTCAATAGCTAAGAGGATAATTAGTTCAACAAATGTAAAGGTCAAAATTGGGGGGGCTGCACTTCTTATTTGTGCTGCAAAAGAAAATCATCAGAGACTGGTGGAGGATCTCAATTTATCAAACTTGTGTGTTAATCTTATTCAGTCTCTAGTTGATATTGTTATTTCTGCACAGCTTTCTTTGGGTAATCAGGGTGATGACAAGAAGGAATTCATCAGCATATGCTGGCCCACAAAAGAAGAGGTCAATGGTTGTGAATCCAACACTGGCACCACCATTATATGTGGTGCGGACTTAGCTATATGGTTATTGTCTATTCTTGCTTGTCGTGATGAAAAAAATAAAATTGCAATAATGGAGGCTGGAGCAATTGATGTCCTCACTGACAGGATCTCAAATTATTTCTCACAATATTCTCAGATTGACTACAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTTCAAGATAGAGATATCATACGGGCACATGCAACCACAAAATCTGTAGCAGCACTTGCCAATTTATTAAAGTCAGAGGAATTGGCAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTTGTCTGTAATGGTAGCAGGGGAACACTTCTTTCTGTTGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATACTGATATACAGAATCTTTTGGAATTGTCAGATGAATTTTTTTTGGTGCGTTATCCTGATCAAGTGGCTCTTGAGAGGTTGTTTAGAGTTGATGATATAAGAGTTGGTGCCACTTCTCGAAAGGCAATACCTGCCCTAGTTGATCTGCTCAAACCAATTCCAGATCGCCCTGGGGCACCATATTTAGCACTTGGGCTTTTGACTCAGCTTGGTAGAGATTGTCCATCGAATAAGATTGTAATGGTAGAGTCGGGGGCCTTAGAGGCACTTACAAAGTATCTTTCACTGAGTCCACAAGATGCAACCGAAGAAGCTGCTACAGATCTGCTAGGAATTCTGTTCAGTAGTGCTGAGATACGAAAACATGAGTCAGCATTTGGTGCTGTTACTCAACTTATAGCTGTGCTACGTTTAGGAGGAAGAGGTGCAAGGTACAGTGCTGCAAAAGCCTTGGAAAGTTTATTTTCTGCTGATCACATTAGAAATGCAGAGATTGCTAGACAAGCTATTCAACCCTTGGTTGAGATTCTTAATACTGGTTCAGAAAGGGAGCAGCATGCTGCAATTGCTGCATTGGTTGGGTTACTGAGTGAAAACCCATCAAGAGCACTGGCTGTTGCAGATGTTGAAATGAATGCAGTGGATGTTCTTTGTAGGATCCTTTCATCAAGTTGTTCAATGGACCTCAAAGGTGATGCTGCCGAATTATGTTGCGCTCTTTTTGGAAATACAAGGATTCGGTCCACGATGGCTGCTGCACAGTGTGTTGAACCTCTAGTGTCTCTCCTTGTAACCGAGTTTAGTCCTGCTCAGCATTCAGTTGTCCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTTGCTGAATTAGTTGTTGCACATGGTGCAGTTGTTCCTCTTGTTGGCCTATTGTCTGGTAGGATACTTCATGAGGCCATATCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGGCCTTCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCCTACTAAACATCTTACATGAAGCACCTGATTATCTATGTGCATCTTTTACAGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTGGTTGAACCCTTGTTTTTGATGCTGACAAAACATGAATTTGGGCCTGATGGACAGCACAGTTCATTGCAGGTTTTGGTTAATATCTTAGAACATCCGCAGTGTCGTGCTGACTATTCATTGACTTCTCACCAAGTTATTGAACCACTTATCCCATTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATCTACTTCTAGAGGAGAAACTTCAAAAGGATCCGGTGACACAACAAGTAATTGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACACATATTACAGCAGAGAGCTGTAAAGGCCCTAGTTAGCATTGCACTAACATGGCCAAATGAAATTGCGAAAGAGGGTGGTGTTATTGAAATTTCCAAAGTGATATTGCAAGCCGATCCTTCCCTTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGTCAAGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTGCCTGTTGCTGTGTTGGTAAGGTTGCTTCGATCTGGCTCAGAGAGCACGGTTGTTGGTGCTTTAAATGCTCTTCTGGTGTTGGAAAGTGATGATGGAACTAGTGCAGAAGCTATGGCTGAAAGTGGTGCTATAGAGGCTCTCTTGGAGCTCCTAAGATCCCATCAGTGTGAGGAAACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCCGAGAGACCAAAGTTACTAAATCAGCTATCTTACCATTATCCCAGTACCTCTTGGACCCACAAACCCAAGCACAGCAGGCAAGGTTATTGGCAACTTTGTCTCTTGGTGACCTGTTCCAGAATGAGGGTCTTGCTCGAACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGAACAACCGACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAAAACCTTGTAATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCCGGTGGTGTCCAGGTTGTATTGGATCTGATAGGTTCAAGTGTTCCAGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTCTTCTCAAATAATACTATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCGATCACTGCCGCTATTGAAAAAGATTTGTGGGCTACTGGAATTGTGAATGAAGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGACTGAGAGCAACTGAACCAGCAACACTTAGCATTCCTCATCTTGTTACATCCTTAAAGACAGGTTCAGAGGCTTGTCAGGAAGCCGCCTTGGACGCGCTTTTTCTTCTTAGACAAGCTTGGTCAGCATGCCCAGCTGAGGTTTCAAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCATTGCTACAGTACTTAATCCAGTCTGGCCCACCCCGGTTTCAGGAGAAGGCAGAACTTTTATTGCAGTGTTTGCCGGGGACATTGGTGGTGATCATTAAGCGCGGTAACAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTACTGCAAGCTTACACTTGGCAGCACTCCACCAAGGCTAACCAAGGTGGTCTCAACTGGCCCTAATCCAGAGTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTAACATTTCTTGCAAAAATAAAAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTAACAATCCAGATTGATCGAGTGGTAATGCTTGGAGCAGTAGCTGGAGAGTACACTCTGTTGCCTCAAAGTAAAAGTGGCCCCTCAAGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6426 0.4283 MATTLTWRLPANDLERNGDGKAQDSEPPTPHSVLKMGLRERSSSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLSELIDMRENAFSAVGSHSQAVPVLVSLLRTGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEGQIAAAKTIYAVSQDGAKDHVGSKIFSTEGVVPVLWEQLQSGLKTGNVVESLLTGALKNLSSNTEGFWNETIQAGGVNVLMKLLATGQPSTLANVCFLLASLMMEDESVCSKVLTAEATKQLLKLLGPGNDDPVRAEAASALKSLSAQCKEARREIANSNGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCTSPTQIADTLGALASALMIYDNKAESTRASDPSVVEQTLIKQFKPRLPFLVQERTIEALASLYGNPILSTKLANSDAKHLLVGLITMAANEVQDELIKALLTLCNSEDSLWRALKGREGIQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAGGGIPPLVQILETGSAKAKEDSARILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLHHLIHKSDTTAISQLTALLTSDLPDSKVYVLDALRSMLSAAPLSDILREGSAASDAFDTMIILLSSAKEETQAKSASALAGIFETRKDVRESSFAVKTLRSAMKLLNVESESILMESSHCLAAIFLSIKENRDVAAVARDAISPLVELASSSILEVAEMATCAVANLILDSEIAEKADPEEVILPATRVLHEGTISGKSHAAAAIARLLHSRQVDYAVTDCVNRSGTVLALVSFLDSAINGSVSTSEALEALAILSRSEQTSAHSKPACAVLAEFPESISPIVLSIVDSTPMLQDKTIEILSRLCKDQAVVLGHAVTSASGCISSIAKRIISSTNVKVKIGGAALLICAAKENHQRLVEDLNLSNLCVNLIQSLVDIVISAQLSLGNQGDDKKEFISICWPTKEEVNGCESNTGTTIICGADLAIWLLSILACRDEKNKIAIMEAGAIDVLTDRISNYFSQYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATTKSVAALANLLKSEELANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQNLLELSDEFFLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPYLALGLLTQLGRDCPSNKIVMVESGALEALTKYLSLSPQDATEEAATDLLGILFSSAEIRKHESAFGAVTQLIAVLRLGGRGARYSAAKALESLFSADHIRNAEIARQAIQPLVEILNTGSEREQHAAIAALVGLLSENPSRALAVADVEMNAVDVLCRILSSSCSMDLKGDAAELCCALFGNTRIRSTMAAAQCVEPLVSLLVTEFSPAQHSVVRALDRLVDDEQLAELVVAHGAVVPLVGLLSGRILHEAISRALVKLGKDRPSCKMEMVKAGVIESLLNILHEAPDYLCASFTELLRILTNNASIAKGPSAAKVVEPLFLMLTKHEFGPDGQHSSLQVLVNILEHPQCRADYSLTSHQVIEPLIPLLDSPISAVQQLAAELLSHLLLEEKLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLSLGDLFQNEGLARTSDAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSVPETSVQAAMFIKLLFSNNTIQEYASSETVRAITAAIEKDLWATGIVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAELLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGSTPPRLTKVVSTGPNPEWDESFSWSFESPPKGQKLNISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYTLLPQSKSGPSRNLEIEFQWSNK 2141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00119 2141 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1372 1604 - -
Gabi606g00119 2141 Coils Coil 289 316 - -
Gabi606g00119 2141 MobiDBLite consensus disorder prediction 1 49 - -
Gabi606g00119 2141 FunFam Coatomer beta subunit 1606 2019 - -
Gabi606g00119 2141 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2020 2128 IPR035892 -
Gabi606g00119 2141 Gene3D - 812 1163 IPR011989 -
Gabi606g00119 2141 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1188 1232 IPR000225 GO:0005515
Gabi606g00119 2141 SMART C2_3c 2021 2117 IPR000008 -
Gabi606g00119 2141 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2020 2141 - -
Gabi606g00119 2141 SUPERFAMILY ARM repeat 1570 2016 IPR016024 -
Gabi606g00119 2141 Gene3D - 642 811 IPR011989 -
Gabi606g00119 2141 Gene3D - 1668 2019 IPR011989 -
Gabi606g00119 2141 Gene3D - 1311 1667 IPR011989 -
Gabi606g00119 2141 Gene3D - 41 396 IPR011989 -
Gabi606g00119 2141 SUPERFAMILY ARM repeat 61 390 IPR016024 -
Gabi606g00119 2141 Gene3D - 1169 1310 IPR011989 -
Gabi606g00119 2141 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 528 570 IPR000225 GO:0005515
Gabi606g00119 2141 SUPERFAMILY ARM repeat 1171 1451 IPR016024 -
Gabi606g00119 2141 Gene3D C2 domain 2020 2141 IPR035892 -
Gabi606g00119 2141 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 21 2141 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Gabi606g00119 2141 Gene3D - 397 641 IPR011989 -
Gabi606g00119 2141 SUPERFAMILY ARM repeat 419 763 IPR016024 -
Gabi606g00119 2141 SMART arm_5 1304 1344 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 1431 1469 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 1556 1597 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 474 515 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 1176 1219 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 260 301 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 303 352 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 128 168 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 1847 1887 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 86 127 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 1221 1262 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 1390 1430 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 517 557 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 559 599 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 1720 1759 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 725 763 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 1471 1511 IPR000225 GO:0005515
Gabi606g00119 2141 SMART arm_5 809 851 IPR000225 GO:0005515
Gabi606g00119 2141 ProSiteProfiles C2 domain profile. 2001 2118 IPR000008 -
Gabi606g00119 2141 SUPERFAMILY ARM repeat 654 1152 IPR016024 -
Gabi606g00119 2141 Pfam C2 domain 2020 2111 IPR000008 -
Gabi606g00119 2141 CDD C2 2022 2112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi606g00119 Gabi-Chr606 1067351 1078164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00119 480 612 U-box Gene Family AT2G23140 40.000 3.99e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi606g00119 - - gmx:100794002 3635.88