Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi606g00111 ATGACGGATCACTTAGGGTCTTCTCCTCTAATCCCTCCTTCACCCATCACCGAGATCGACCTCGAAGCCGGTTCCACCGAACTAATTCAGTGCCGTATATGTCTTGAAACTGAAGGTAGAGATTTCATAGCTCCTTGCAAGTGCAAAGGTACATCAAAATATGTACATCGAGAGTGTTTGGATCATTGGCGAGCAGTTAGGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCATATCATTTGCGTGTTCATGGTGCTGTTGATAGGAAATGGCGTACCTTGAAATTTCGGTTTTTTGTCACCCGAGACATTTTGTTTATATTCCTGGCTGTACAGCTTGTCATTGCTTCACTGGCTTATTTGGTTTATCTAGTAGATGGTTACCAACAGTATTGGCTTCGTCTTGTTTGGAGTTTTGATAGTGAGCTGAGCTTTTACTACATATGTGGAGCGCTGTTGTTTTTTGTGTTGCTTGGCCTGTCTGGGTGCTTCATTACTTTTTATGATCGAAGAGTTCGCAATGATTTGGCTCAGCCTTGTCGTGAAATATGTCTCTGTTGCTGTCAACCTGGAGTTTGTGCGGACTGTCATTTGCCAGGTACTCTTTGTATGTGGACTGATTGCACCGCATGCTTTGAGAGCTGTGGAACCATGGCAACTGAATGTGGTGGTTGCATGGGAGGTGCTGGGGAAGCAGGGCTACCATTGTTATTCATACTGGCTTTGATTTTTCTGGGACTCTTTACTGTAATTGGCATATTTTACAGTGTATTAGTGGCTACCATGGTTGGACAGCGGATATGGCAGCGTCATTATCACATACTTGCAAAAAGGATGCTAACCAAGGAGTATGTCGTTGAGGACATCGATGGAGAGTTAACAGGGTCTGATTGGTCTCCTCCATCTCTCCCACCCGAGCATGTTCAGCAGCTGAAAACATTGGGCCTCCTATGA 963 0.4517 MTDHLGSSPLIPPSPITEIDLEAGSTELIQCRICLETEGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHGAVDRKWRTLKFRFFVTRDILFIFLAVQLVIASLAYLVYLVDGYQQYWLRLVWSFDSELSFYYICGALLFFVLLGLSGCFITFYDRRVRNDLAQPCREICLCCCQPGVCADCHLPGTLCMWTDCTACFESCGTMATECGGCMGGAGEAGLPLLFILALIFLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDIDGELTGSDWSPPSLPPEHVQQLKTLGLL 320
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi606g00111 320 SMART ringv_2 30 79 IPR011016 GO:0008270
Gabi606g00111 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 91 IPR013083 -
Gabi606g00111 320 SUPERFAMILY RING/U-box 26 83 - -
Gabi606g00111 320 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 18 319 - -
Gabi606g00111 320 Pfam RING-variant domain 31 78 IPR011016 GO:0008270
Gabi606g00111 320 ProSiteProfiles Zinc finger RING-CH-type profile. 23 85 IPR011016 GO:0008270
Gabi606g00111 320 CDD RING_CH-C4HC3_MARCH 31 79 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi606g00111 Gabi-Chr606 980245 984288 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi606g00111 1 320 C3H Transcription Factor Family AT2G22120 82.099 0.0 540